View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17437_high_1 (Length: 561)
Name: NF17437_high_1
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_high_1 |
 | |
|
| [»] scaffold0085 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 169 - 544
Target Start/End: Original strand, 6912749 - 6913124
Alignment:
| Q |
169 |
ccaataagaaataaaaagagagctaaataaggttatcacaaaaattgtcataaatagttgtacaaatatcactaatgattttttaaatgtgagcattgaa |
268 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6912749 |
ccaataaaaaataagaagagagctaaataaggttatcacaaaaattgtcataaatagttgtacaaatatcactaatgattttttaaatgtgagcattgaa |
6912848 |
T |
|
| Q |
269 |
aaagtatcacccaaaacaatgtcatcattctttggtcgaccttgagaaagactatattattaattaaaatcaagtaaacattaaacacaacaatgatgaa |
368 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6912849 |
aaagtatctcccaaaacaatgtcatcattctttggtcgaccttgagaaagactatattattaattaaaatcaattaaacattaaacacaacaatgatgaa |
6912948 |
T |
|
| Q |
369 |
tcagtgtcactatacatgttttaagatgaaatcaaaataaaatgatgaatggaaaaacgtcatatcaaaaccaaccaatcttgttttgaaagctcaaaac |
468 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6912949 |
tcagtgtcactatgcatgttttaagatgaaatcaaaataaaatgttgaatggaaaaacgtcatatcaaaaccaaccaatcttgttttgaaagctcaaaac |
6913048 |
T |
|
| Q |
469 |
aatc-nnnnnnnttaatagtgnnnnnnnntgtgataaacacatatattctactatttttatccgtagttgcattgtg |
544 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6913049 |
aatcaaaaaaaattaatagtg-aaaaaaatgtgataaacacatatattctactatttttatccgtagttgcattgtg |
6913124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 6912597 - 6912663
Alignment:
| Q |
8 |
cgaagaaaatatatttccaaaaacatgtgaatatttttaaaagaaatgtaatttgtacaacaatttt |
74 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
6912597 |
cgaacaaaatatatttccaaaaacatgtgaatatttttaaaagaaatgttatttgtacaaccatttt |
6912663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 36539036 - 36539065
Alignment:
| Q |
213 |
ttgtcataaatagttgtacaaatatcacta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36539036 |
ttgtcataaatagttgtacaaatatcacta |
36539065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 32106 - 32155
Alignment:
| Q |
193 |
aaataaggttatcacaaaaattgtcataaatagttgtacaaatatcacta |
242 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
32106 |
aaataaggttgttacaaaaattgtcacaaataattgtacaaatatcacta |
32155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 40528525 - 40528487
Alignment:
| Q |
201 |
ttatcacaaaaattgtcataaatagttgtacaaatatca |
239 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
40528525 |
ttatcacaaaaattatcacaaatagttgtacaaatatca |
40528487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 17570753 - 17570720
Alignment:
| Q |
209 |
aaaattgtcataaatagttgtacaaatatcacta |
242 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
17570753 |
aaaattgtcacaaatagttgtacaaatatcacta |
17570720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University