View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_high_11 (Length: 319)
Name: NF17437_high_11
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 29016451 - 29016724
Alignment:
| Q |
18 |
catttcatgcagacagatgtatctaaggagctatacattttccagagaagaagaaaaaacccaaaaatgttttggtagggtgagagagaaagtggatcat |
117 |
Q |
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| T |
29016451 |
catttcatgcagacagatgtatctaaggagctatacattttccagagaagaagaaaaaacccaaaaatgttttggtagggtgagagagaaagtggatcat |
29016550 |
T |
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| Q |
118 |
gatggaaagaagaaaagaaatcaaagtagaagaaggaataagtgtttggttttaagtaaaatgaaggaaatttcttgtaatactttgtttcggatgtttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29016551 |
gatggaaagaagaaaagaaatcaaagtagaagaaggaataagtgtttggttttaagtaaaatgaaggaaatttcttgtaatactttgtttcggatgtttc |
29016650 |
T |
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| Q |
218 |
ataagttcttgtcatgtggcactagtgttgatgttgtgaatcaaaaacaacaacattgacctttgtttttaatt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29016651 |
ataagttcttgtcatgtggcactagtgttgatgttgtgaatcaaaaacaacaacattgacctttgtttttaatt |
29016724 |
T |
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