View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17437_high_13 (Length: 304)

Name: NF17437_high_13
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17437_high_13
NF17437_high_13
[»] chr3 (6 HSPs)
chr3 (15-287)||(54800301-54800573)
chr3 (188-285)||(19836018-19836118)
chr3 (109-155)||(19840500-19840546)
chr3 (16-50)||(54493480-54493514)
chr3 (188-252)||(20032302-20032366)
chr3 (188-252)||(20034471-20034535)
[»] chr7 (4 HSPs)
chr7 (16-285)||(31308992-31309261)
chr7 (16-176)||(4287168-4287327)
chr7 (142-282)||(23678054-23678194)
chr7 (226-285)||(4287329-4287388)
[»] chr8 (2 HSPs)
chr8 (16-285)||(23565602-23565868)
chr8 (16-285)||(33852560-33852829)
[»] chr4 (1 HSPs)
chr4 (16-285)||(43420362-43420633)
[»] chr1 (1 HSPs)
chr1 (16-285)||(10613447-10613709)
[»] chr5 (4 HSPs)
chr5 (19-202)||(26243791-26243974)
chr5 (134-285)||(30971959-30972109)
chr5 (16-125)||(11277267-11277376)
chr5 (188-255)||(9817018-9817085)
[»] chr6 (1 HSPs)
chr6 (16-285)||(23597257-23597519)
[»] chr2 (2 HSPs)
chr2 (9-50)||(7275449-7275490)
chr2 (16-48)||(6730592-6730624)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 54800301 - 54800573
Alignment:
15 aatattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggt 114  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
54800301 aatattaaaggcaaacaattaacatttagctttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggt 54800400  T
115 tgtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||    
54800401 tgtccctttagattatgtttgaaactgaatagttgtttcttatgcacttatacttttctatttcatttatatgcttcaatactgtcatgatctacttaat 54800500  T
215 atgctcaacttcagtcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatacttct 287  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
54800501 atgctcaacgtcaatcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatacttct 54800573  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 285
Target Start/End: Complemental strand, 19836118 - 19836018
Alignment:
188 cttcaatattgtcatgatctacttaatatgctcaacttcagtcccttcacatttacttacct-actactt--cttttttgatgcaaaggcaaaatatact 284  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||   ||||||| ||||||||||||| |||||    
19836118 cttcaatattgtcatgatcttcataataggctcaacttcagtcccttcacatttacttacctaactactttctttttttgttgcaaaggcaaaagatact 19836019  T
285 t 285  Q
    |    
19836018 t 19836018  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 19840500 - 19840546
Alignment:
109 tttggttgtccctttagattatgtttgaaactcaatagttgtttctt 155  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||    
19840500 tttggttgtccctttagattatgtttgaaaatgaatactggtttctt 19840546  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 54493514 - 54493480
Alignment:
16 atattaaaggcaaacaattaatatttaactttaat 50  Q
    ||||||||||||||||||||| |||||||||||||    
54493514 atattaaaggcaaacaattaacatttaactttaat 54493480  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 20032302 - 20032366
Alignment:
188 cttcaatattgtcatgatctacttaatatgctcaacttcagtcccttcacatttacttacctact 252  Q
    ||||||||||| |||||| | | |||||  |||||||||| |||||||||||||| | |||||||    
20032302 cttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacatttattcacctact 20032366  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 20034471 - 20034535
Alignment:
188 cttcaatattgtcatgatctacttaatatgctcaacttcagtcccttcacatttacttacctact 252  Q
    ||||||||||| |||||| | | |||||  |||||||||| |||||||||||||| | |||||||    
20034471 cttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacatttattcacctact 20034535  T

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Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 31309261 - 31308992
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    ||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
31309261 atattaaaggcaaacaattaacagttagttttaatgaaaatcttttagaatctccacttgatacttgcttcttcatctatgttatatggactatttggtt 31309162  T
116 gtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaata 215  Q
    ||| ||||||||||||||||||| | ||| |||||||||| ||||| | |||| ||||||||||||  |||||||||| |||||||||||||||||||||    
31309161 gtctctttagattatgtttgaaattgaattgttgtttcttctgcacctatgcttttctatttcattcctatgcttcaacattgtcatgatctacttaata 31309062  T
216 tgctcaacttcagtcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
     |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||  ||||||||||||    
31309061 ggctcaacttcagccccttcacatttacttacctgctacttcttttttgttgcaaaaacaaaatatactt 31308992  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 4287168 - 4287327
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    |||||||||||||||| |||| | ||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||    
4287168 atattaaaggcaaacacttaacagttagctttaatgaaaatcttttagaatatccacttgata-ttggttcttcatctatgttatatggactatttggtt 4287266  T
116 gtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatt 176  Q
    || |||||||||||| ||||||||| |||||||||||||| ||||| | |||| |||||||    
4287267 gttcctttagattatatttgaaactgaatagttgtttcttctgcacctatgcttttctatt 4287327  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 23678054 - 23678194
Alignment:
142 aatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaatatgctcaacttcagtcccttcacattt 241  Q
    |||||||||||||| ||||| | || | ||| ||||||||  |||| || |||||||| || ||||||||||||  |||||||||| || ||| ||||||    
23678054 aatagttgtttcttctgcacctatgtttttccatttcattcctatgttttaatattgttattatctacttaatagactcaacttcaatcgcttaacattt 23678153  T
242 acttacctactacttcttttttgatgcaaaggcaaaatata 282  Q
    | || |||| ||||||||||||| |||||||||||||||||    
23678154 attttcctattacttcttttttgttgcaaaggcaaaatata 23678194  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 4287329 - 4287388
Alignment:
226 cagtcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
4287329 cagtcccttcacatttacttacctactacttcttttttgttgcaaaggcaaaatacactt 4287388  T

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Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 23565868 - 23565602
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    |||||||||||||||||||||   ||| | |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||    
23565868 atattaaaggcaaacaattaacggttagccttaatgaaaatcttttagaatctccacttgatacta--ttcttcatctatattatatggactatttgatt 23565771  T
116 gtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaata 215  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||| | |||| || ||||||||| |||||||||||||||||||| ||||||||||||    
23565770 gtccctttagattatgtttgaaactgaatagttgtttcttctgcacctatgcttttatatttcattcatatgcttcaatattgtcat-atctacttaata 23565672  T
216 tgctcaacttcagtcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
     ||||||||||| |||||||||||  ||||||||| ||||||||||||  ||||||||||||||||||||    
23565671 ggctcaacttcactcccttcacataaacttacctagtacttcttttttattgcaaaggcaaaatatactt 23565602  T

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Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 33852829 - 33852560
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    ||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
33852829 atattaaagacaaacaattaacagttaactttaatgaaaatgttttagaatctccacttgatacttggttcttcatctatgttatatggactatttggtt 33852730  T
116 gtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaata 215  Q
    ||||||||||||||||||||| ||| ||||||||  |||| | ||| | |  | ||||||||| ||  |||||||||||||||| | |||||| ||||||    
33852729 gtccctttagattatgtttgatactaaatagttgactcttctacacctatttttttctatttctttcctatgcttcaatattgttacgatctatttaata 33852630  T
216 tgctcaacttcagtcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
33852629 tgctcaaactcagtcccttcacatttacttacctaccacttcttttttgttgcaaaggcaaaatatactt 33852560  T

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Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 43420633 - 43420362
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    |||||||| |||||||||||| ||||  |||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||    
43420633 atattaaaagcaaacaattaacatttggctttaatgaaaatcttttagaatctctacttgatatttggttcttcatctatgttatatggactatttggtt 43420534  T
116 gtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaata 215  Q
    ||| ||||||||||||||||||| | |||||||||||||| ||||| | |  | |||||||||||| |||||||||||||||||||||||||||||||||    
43420533 gtctctttagattatgtttgaaattgaatagttgtttcttctgcacgtataattttctatttcattcatatgcttcaatattgtcatgatctacttaata 43420434  T
216 tgctcaacttcagtcccttcac--atttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
     |||||||||||||||||||||  ||||||||| ||| | |||||| |||  ||||||||||||||||||||    
43420433 ggctcaacttcagtcccttcacagatttacttatctattgcttcttcttttttgcaaaggcaaaatatactt 43420362  T

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Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 10613709 - 10613447
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    |||||||||||||||||| || | ||| |||||||| |||||||||||||||||||||||||||||  || |||||||||       |||||||||||||    
10613709 atattaaaggcaaacaatgaacagttagctttaatggaaatcttttagaatctccacttgatacttgatttttcatctat-------ggactatttggtt 10613617  T
116 gtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaata 215  Q
    || |||||||||||| ||||||||| |||||||||||||| | ||| | || | |||||||||||| |||||||||||||||||| ||||||||||||||    
10613616 gttcctttagattatatttgaaactgaatagttgtttcttctacacctatgtttttctatttcattcatatgcttcaatattgtcgtgatctacttaata 10613517  T
216 tgctcaacttcagtcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
10613516 ggctcaacttcagtcccttcacatttacttacctactacttcttttttgttgcaaaggcaaaatatactt 10613447  T

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Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 26243974 - 26243791
Alignment:
19 ttaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggttgtc 118  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||    
26243974 ttaaaggcaaacaattaacaattagctttaatgaaaatcttttagaatctccacttgatacttggttcttcatctatgttatatggactatttggttatc 26243875  T
119 cctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcat 202  Q
    |||||||||||||||||||| | |||||||||||||| ||||| | |||| ||||||||||||  |||||||||||||||||||    
26243874 cctttagattatgtttgaaattgaatagttgtttcttctgcacctatgcttttctatttcattcctatgcttcaatattgtcat 26243791  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 285
Target Start/End: Complemental strand, 30972109 - 30971959
Alignment:
134 tgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaatatgctcaacttcagtccct 233  Q
    ||||||| ||||| |||||||| ||||||  || | ||||||||||||  |||| ||||||||| ||||||||||||||||| |||||||||||||||||    
30972109 tgaaactgaatagctgtttcttctgcactaatgattttctatttcattcttatgtttcaatattatcatgatctacttaataggctcaacttcagtccct 30972010  T
234 tcacatttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
    | ||||||||||||||||||||| ||||||| ||||||||||||||||||||    
30972009 taacatttacttacctactactt-ttttttgttgcaaaggcaaaatatactt 30971959  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 11277376 - 11277267
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    |||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||| ||   ||||||||||| |||||||||||||||||||    
11277376 atattaaaggcaaacaattaacggttagctttaatgaaaatcttttagaatctccacttgatatttgaatcttcatctatgttatatggactatttggtt 11277277  T
116 gtccctttag 125  Q
    ||||||||||    
11277276 gtccctttag 11277267  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 9817085 - 9817018
Alignment:
188 cttcaatattgtcatgatctacttaatatgctcaacttcagtcccttcacatttacttacctactact 255  Q
    ||||||||||| |||||||||| |||||   |||||||||||||||| | ||||| ||| ||||||||    
9817085 cttcaatattgccatgatctacataatagcttcaacttcagtccctttatatttatttaactactact 9817018  T

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Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 23597257 - 23597519
Alignment:
16 atattaaaggcaaacaattaatatttaactttaatgaaaatcttttagaatctccacttgatacttagttcttcatctatattatatggactatttggtt 115  Q
    ||||||||| |||||||||||    || |||||||||||||||||||||||||| |||| |||||| |||||||||||||  ||||||||||||||| ||    
23597257 atattaaagacaaacaattaactggtagctttaatgaaaatcttttagaatctctactttatactttgttcttcatctatgctatatggactatttgatt 23597356  T
116 gtccctttagattatgtttgaaactcaatagttgtttcttatgcacttgtgctgttctatttcatttatatgcttcaatattgtcatgatctacttaata 215  Q
    ||||||||| ||||||    ||||| |||||||| ||||| ||||| | || | ||||||||||||| ||||||||||||||||||||||||||||||||    
23597357 gtccctttaaattatg----aaactgaatagttgattcttctgcacctatgtttttctatttcatttctatgcttcaatattgtcatgatctacttaata 23597452  T
216 tgctcaacttcagtcccttcacatttacttacctactacttcttttttgatgcaaaggcaaaatatactt 285  Q
     ||||| |||| || | |||||||||||||| ||||||   |||||||| || | |||||||||||||||    
23597453 ggctcagcttcggttctttcacatttacttatctacta---cttttttgttgtagaggcaaaatatactt 23597519  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 7275490 - 7275449
Alignment:
9 tcgaagaatattaaaggcaaacaattaatatttaactttaat 50  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
7275490 tcgaaaaatattaaaggcaaacaattaacagttaactttaat 7275449  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 6730592 - 6730624
Alignment:
16 atattaaaggcaaacaattaatatttaacttta 48  Q
    ||||||||||||||||||||||| |||||||||    
6730592 atattaaaggcaaacaattaatagttaacttta 6730624  T

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