View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17437_high_14 (Length: 300)
Name: NF17437_high_14
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 6809016 - 6809258
Alignment:
| Q |
20 |
atatagttcgagccatgtggatgaaaaaaggtgatcgagagggaaaaacatactaaaggtgatcatattctccaacaaagatttgtcattgacaaagtag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6809016 |
atatagttcgagccatgtggatgaaaaaaggtgatcgagagggaaaaacatactaaaggtgatcatattctccaacaaagatttgtcattgacaaagtag |
6809115 |
T |
|
| Q |
120 |
gtggatacttcatatcaataacatgattac--aaaaaaaaagctagattccctnnnnnnnnnngctagattcccataaaggagcatgcaacatgacaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6809116 |
gtggatacttcatatcaataacatgattacaaaaaaaaaaagctagattcc----------------------cataaaggagcatgcaacatgacaaat |
6809193 |
T |
|
| Q |
218 |
tgctagtttgtgaaaatttctaaattatagggagggtaaataactaaatatggagaaataatctt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6809194 |
tgctagtttgtgaaaatttctaaattatagggagggtaaataactaaatatggagaaataatctt |
6809258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 6817318 - 6817357
Alignment:
| Q |
207 |
acatgacaaattgctagtttgtgaaaatttctaaattata |
246 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
6817318 |
acatgacaaattgctagtttgtgaagatttctaaactata |
6817357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 53587957 - 53587986
Alignment:
| Q |
128 |
ttcatatcaataacatgattacaaaaaaaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
53587957 |
ttcatatcaataacatgattacaaaaaaaa |
53587986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University