View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_high_15 (Length: 293)
Name: NF17437_high_15
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 49253127 - 49253392
Alignment:
| Q |
19 |
cgccatgcatcaaagattaccgaggaagaggaagatgaagaataccttaaagaagaagaaggagggttaggaaatacacggctggttactcaaccatcat |
118 |
Q |
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| T |
49253127 |
cgccatgcatcaaagattactgaggaagaggaagatgaagaataccttaaagaagaagaaggagggttaggaaatacacggctggttactcaaccatcat |
49253226 |
T |
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| Q |
119 |
gtaagctatattttctttttgtgtgtgcattggtgcagtgataagatggttatctcttacccttccgttctttatgtctaatatagcacatgctttcatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49253227 |
gtaagctatattttctttttgtgtgtgcattggtgcagtgataagatggttatctcttacccttccgttctttatgtctaagatagcacatgctttcatt |
49253326 |
T |
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| Q |
219 |
tctcacatttcattgccnnnnnnnnggaaaataaatgctagaatatctgcttcctgtcataatatt |
284 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
49253327 |
tctcacatttcattgccttttttttggaaaataaatgctggaatatctgcttcctgtcataatatt |
49253392 |
T |
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