View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17437_high_16 (Length: 290)

Name: NF17437_high_16
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17437_high_16
NF17437_high_16
[»] chr4 (7 HSPs)
chr4 (1-257)||(7628767-7629023)
chr4 (1-250)||(7637213-7637462)
chr4 (3-253)||(7615398-7615648)
chr4 (1-253)||(7606382-7606634)
chr4 (1-249)||(7655862-7656110)
chr4 (1-114)||(7633536-7633650)
chr4 (169-231)||(7633664-7633726)
[»] chr7 (6 HSPs)
chr7 (1-253)||(8935822-8936074)
chr7 (38-250)||(8910886-8911098)
chr7 (1-137)||(8938714-8938850)
chr7 (1-43)||(8913524-8913566)
chr7 (1-114)||(8918977-8919091)
chr7 (169-231)||(8918901-8918963)
[»] chr3 (2 HSPs)
chr3 (23-205)||(40147134-40147316)
chr3 (23-156)||(8102629-8102762)
[»] chr6 (1 HSPs)
chr6 (13-250)||(6500644-6500882)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7628767 - 7629023
Alignment:
Q  1 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628767 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcattt 7628866  T
Q  101 ccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628867 ccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacggg 7628966  T
Q  201 tcacatagcatcaaacgtgagttaaaagcgcttgtagagaagatattttgatgttac 257  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7628967 tcacatagcaccaaacatgagttagaagcgcttgtagagaagatattttgatgttac 7629023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 7637213 - 7637462
Alignment:
Q  1 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcattt 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7637213 agcaattaacttgttcatctccaaagcacctttacaaagtccaccttcctccaacaattccccagctttcattttaaccatacaacttataagtgcattt 7637312  T
Q  101 ccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacggg 200  Q
    |||||||||||||||||||| |||||||  | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637313 ccaaaataatcttctggtaacggtggaactaaccttggtcgaactcctatcacgactctattaaatacttcttcttgtgggtcaaattgtttgaaacggg 7637412  T
Q  201 tcacatagcatcaaacgtgagttaaaagcgcttgtagagaagatattttg 250  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7637413 tcacatagcaccaaacgtgagttaaaagtgcttgtagagaagatattttg 7637462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 7615398 - 7615648
Alignment:
Q  3 caattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttcc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| || |||||||||||||||||||||||||||||||||||||    
T  7615398 caattaacttgttcatctcacaagcacctttacaaagtccaccttcttccaccaactccccaactttcattttaaccatacaacttataagtgcatttcc 7615497  T
Q  103 aaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacgggtc 202  Q
    |||||||| |||||||||||||||||  | |||||||| |||||||||| | ||| |||||||||||||||||||||||||||||| | || ||||  ||    
T  7615498 aaaataatattctggtaatggtggaactaaccttggtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatc 7615597  T
Q  203 acatagcatcaaacgtgagttaaaagcgcttgtagagaagatattttgatg 253  Q
    ||| |||| |||| ||||||||||||| |||||||||||||||||||||||    
T  7615598 acagagcaccaaaggtgagttaaaagcacttgtagagaagatattttgatg 7615648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 7606382 - 7606634
Alignment:
Q  1 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcattt 100  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||| ||  || |||||||||| || |||||||||||||  |  |||    
T  7606382 agcaattaatttgttcatctcacaagcacctttatatagtccaccttcgtccaacaactcaccaactttcattttgactatacaacttataatcgagttt 7606481  T
Q  101 ccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacggg 200  Q
    |||||||||||||||||||||||||||| || |||||||| |||||||||| |||||  |||| |||||||||||||| |||||||||||||| |||||     
T  7606482 ccaaaataatcttctggtaatggtggaacaaaccttggtccaactcctatcacgactagattatatacttcttcttgtaggtcaaattgtttggaacgga 7606581  T
Q  201 tcacatagcatcaaacgtgagttaaaagcgcttgtagagaagatattttgatg 253  Q
      ||| |||| |||| |||||||||||||||||||||||||| ||||||||||    
T  7606582 cgacagagcaccaaaggtgagttaaaagcgcttgtagagaagttattttgatg 7606634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 7656110 - 7655862
Alignment:
Q  1 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcattt 100  Q
    |||||||||||| ||||||    |||||||||||| ||  ||||||||||||||||| ||| || |||||||||||| |   |||| |||||  || |||    
T  7656110 agcaattaacttattcatcaacaaagcacctttaccaatcccaccttcctccaacaactccccaactttcattttaaacccgcaacctataatcgcgttt 7656011  T
Q  101 ccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacggg 200  Q
    |||||||||||||| || |||||||||| ||| |||||||||||||||||   ||   ||||||   | ||||||||||| ||||  |||||| ||||      
T  7656010 ccaaaataatcttccggcaatggtggaacaagtcttggtctaactcctattatgaacgtattaagcgcatcttcttgtggatcaagatgtttggaacgaa 7655911  T
Q  201 tcacatagcatcaaacgtgagttaaaagcgcttgtagagaagatatttt 249  Q
    ||||  | || ||||  ||||||||||||||||||||||||||||||||    
T  7655910 tcactgaacaccaaagatgagttaaaagcgcttgtagagaagatatttt 7655862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 7633536 - 7633650
Alignment:
Q  1 agcaattaacttgttcatctcacaagcaccttta-caaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatt 99  Q
    |||||||||||||||||||||  | ||||||||  ||| | ||||| |||||||| || ||| || |||| ||||||||| |||||| ||||| ||||||    
T  7633536 agcaattaacttgttcatctccgatgcaccttttgcaatgcccaccctcctccaataactccccaactttaattttaaccttacaacatataactgcatt 7633635  T
Q  100 tccaaaataatcttc 114  Q
    ||||||| |||||||    
T  7633636 tccaaaacaatcttc 7633650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 7633664 - 7633726
Alignment:
Q  169 ttcttcttgtgggtcaaattgtttgaaacgggtcacatagcatcaaacgtgagttaaaagcgc 231  Q
    ||||||||||| ||||| ||||||| |||||||||||| ||| |||| ||||| |||||||||    
T  7633664 ttcttcttgtgcgtcaagttgtttggaacgggtcacatggcaccaaaggtgagctaaaagcgc 7633726  T

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Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 8936074 - 8935822
Alignment:
Q  1 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||| |||||||    
T  8936074 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttccttcaacaactccccagctgtcattttaaccatacaacttataactgcattt 8935975  T
Q  101 ccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacggg 200  Q
    |||||||||| |||||||||||||||||  | |||||||| |||||||||| ||| ||||||||  ||||||||||||||||||| || |||| |||       
T  8935974 ccaaaataatattctggtaatggtggaactaaccttggtccaactcctatcacgattctattaaccacttcttcttgtgggtcaatttttttggaacaca 8935875  T
Q  201 tcacatagcatcaaacgtgagttaaaagcgcttgtagagaagatattttgatg 253  Q
    ||||| |||| |||| |||||||||| ||||||||||||||||||||||||||    
T  8935874 tcacacagcaccaaaggtgagttaaaggcgcttgtagagaagatattttgatg 8935822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 8911098 - 8910886
Alignment:
Q  38 agtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaatggtggaataagccttg 137  Q
    |||||||||||||||||||  ||| || |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||  | |||||    
T  8911098 agtccaccttcctccaacagctccccaactttcattttaaccatacaacttacaattgcatttccaaaataatattctggtaatggtggaactaaccttg 8910999  T
Q  138 gtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacgggtcacatagcatcaaacgtgagttaaaagcgcttgtag 237  Q
    ||| ||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||   |||||||| | || | |||||||||||| ||||||||    
T  8910998 gtccaactcctatcatgactctattaaatacttcatcttgtggatcaaattgtttgaaacatatcacataggaccagatgtgagttaaaagtgcttgtag 8910899  T
Q  238 agaagatattttg 250  Q
    |||||||||||||    
T  8910898 agaagatattttg 8910886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 8938850 - 8938714
Alignment:
Q  1 agcaattaacttgttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcattt 100  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| ||  || |||||||||| || |||||||||||||  |  |||    
T  8938850 agcaattaacttgttcatctcacaagcacctttatatagtccaccttcgtccaacaactcaccaactttcattttgactatacaacttataatcgagttt 8938751  T
Q  101 ccaaaataatcttctggtaatggtggaataagccttg 137  Q
    |||||||||||||||||||||||||||| || |||||    
T  8938750 ccaaaataatcttctggtaatggtggaacaaaccttg 8938714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8913566 - 8913524
Alignment:
Q  1 agcaattaacttgttcatctcacaagcacctttacaaagtcca 43  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  8913566 agcaattaacttgttcatctccaaagcacctttacaaagtcca 8913524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 8919091 - 8918977
Alignment:
Q  1 agcaattaacttgttcatctcacaagcaccttta-caaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatt 99  Q
    ||||||||| |||||||||||  | ||||||||  ||| | ||||| |||||||| || ||| || |||| |||||||||  ||||| ||||| ||||||    
T  8919091 agcaattaatttgttcatctccgatgcaccttttgcaatgcccaccctcctccaataactccccaactttaattttaacctcacaacatataactgcatt 8918992  T
Q  100 tccaaaataatcttc 114  Q
    ||||||| |||||||    
T  8918991 tccaaaacaatcttc 8918977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 8918963 - 8918901
Alignment:
Q  169 ttcttcttgtgggtcaaattgtttgaaacgggtcacatagcatcaaacgtgagttaaaagcgc 231  Q
    |||||||| || ||||| ||||||| |||||||||||| ||| |||| ||||| |||||||||    
T  8918963 ttcttcttatgcgtcaagttgtttggaacgggtcacatggcaccaaaggtgagctaaaagcgc 8918901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 40147316 - 40147134
Alignment:
Q  23 caagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaatg 122  Q
    ||||||||||||| ||| ||||| || |||||||| ||  | ||||||||| ||||| |||||  |  ||  |||||||||||||||||||| || ||||    
T  40147316 caagcacctttaccaagcccaccatcttccaacaactctcccgctttcattgtaaccctacaaacttcaacagcatttccaaaataatcttcaggcaatg 40147217  T
Q  123 gtggaataagccttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacgggtcaca 205  Q
    |||||| || ||||| |||| |||||||||||||  ||| | | |||||||| |||||||||||||||||| ||||| |||||    
T  40147216 gtggaacaaaccttgatctagctcctatcgcgaccatataataaacttcttcgtgtgggtcaaattgtttggaacggatcaca 40147134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 8102629 - 8102762
Alignment:
Q  23 caagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaatg 122  Q
    ||||||| ||||| ||  || ||||| |||||||| ||| || ||||||||  ||||||| ||  || ||  |||||||||||||||||||| || ||||    
T  8102629 caagcacatttaccaaacccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatg 8102728  T
Q  123 gtggaataagccttggtctaactcctatcgcgac 156  Q
    |||||| || |||| |||||||||||||| ||||    
T  8102729 gtggaacaaacctttgtctaactcctatcccgac 8102762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 6500644 - 6500882
Alignment:
Q  13 gttcatctcacaagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatct 112  Q
    ||||||||| ||||||||||||| ||  || ||||| |||||||| ||  ||||||||||  ||||| |||||  ||| |  ||||||||||||||||||    
T  6500644 gttcatctcccaagcacctttaccaatcccgccttcttccaacaactcaccagctttcatgctaaccctacaatctatcacagcatttccaaaataatct 6500743  T
Q  113 tctggtaatggtggaataagccttggtctaactcctatcgcgactctattaaatacttcttctt-gtgggtcaaattgtttgaaacgggtcacatagcat 211  Q
    | ||||||| |||||| ||||||||||||||| |||||   ||   ||||  | |||||||||| ||||||||| || |||| || || ||||| | |      
T  6500744 tgtggtaatagtggaacaagccttggtctaacgcctattaggaacatattgtaaacttcttcttggtgggtcaagttttttggaatggatcacagaacgc 6500843  T
Q  212 caaacgtgagttaaaagcgcttgtagagaagatattttg 250  Q
    |||| |||||||||||| |||||||  || |||||||||    
T  6500844 caaatgtgagttaaaagagcttgtaaggatgatattttg 6500882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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