View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_high_18 (Length: 266)
Name: NF17437_high_18
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 7130274 - 7130511
Alignment:
| Q |
17 |
aaatagtaggttcaagtctatcaaatggagctactaaaacgttcacagtgatcagccatggatgaatatcagaaacaaacaagattaagcaaagaaaata |
116 |
Q |
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| T |
7130274 |
aaatagtaggttcaagtctatcaaatggagctactaaaacgtttacagtgatcagccatggatgaatatcagaaacaaacaagattaagcaaagaaaata |
7130373 |
T |
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| Q |
117 |
catcaacaagatatcttctcccatgacacactcaacatgaaacctattcatttttaaagaacagtttttaacacataaaatactggatcttaaattatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
7130374 |
catcaacaagatatcttctcccatgacacactcaacatgaaacctattcatttttaaagaacagtttttaacacatcaaatactggatcataaattatca |
7130473 |
T |
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| Q |
217 |
aatgtccattggagaaccaccttggtcggccccacctt |
254 |
Q |
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| T |
7130474 |
aatgtccattggagaaccaccttggtcggccccacctt |
7130511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 20865616 - 20865422
Alignment:
| Q |
49 |
actaaaacgttcacagtgatcagccatggatgaatatcagaaacaaacaagattaagcaaagaaaatacatcaacaagatatcttctcccatgacacact |
148 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20865616 |
actaaaacgttcacaatgatcagccatggatgaatttcagaaacaaacaagattaagcaaagaaaatacatcatagagatatcttctcccatgacacact |
20865517 |
T |
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| Q |
149 |
caacatgaaacctattcatttttaaagaacagtttttaacacataaaatactggatcttaaattatcaaatgtccattggagaaccaccttggtc |
243 |
Q |
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| T |
20865516 |
caacattaaacctattcatcttcaaataacagtttttaacacctcaattactggatcttaaattatcaaatgtccattggagaaccaccttggtc |
20865422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 3402294 - 3402100
Alignment:
| Q |
49 |
actaaaacgttcacagtgatcagccatggatgaatatcagaaacaaacaagattaagcaaagaaaatacatcaacaagatatcttctcccatgacacact |
148 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3402294 |
actaaaacgttcacaatgatcagccatggatgaatttcagaaacaaacaagattaagcaaagaaaatacatcatagagatatcttctcccatgacacact |
3402195 |
T |
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| Q |
149 |
caacatgaaacctattcatttttaaagaacagtttttaacacataaaatactggatcttaaattatcaaatgtccattggagaaccaccttggtc |
243 |
Q |
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| T |
3402194 |
caacattaaacctattcattttcagataacagtttttaacacctcaagtactggatcttaaattatcaaatgcccattggagaaccaccttggtc |
3402100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 53043353 - 53043416
Alignment:
| Q |
179 |
agtttttaacacataaaatactggatcttaaattatcaaatgtccattggagaaccaccttggt |
242 |
Q |
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|||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53043353 |
agtttttaacacctcaagtactggatcttaagttatcaaatgtccattggagaaccaccttggt |
53043416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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