View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17437_high_6 (Length: 369)

Name: NF17437_high_6
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17437_high_6
NF17437_high_6
[»] chr2 (2 HSPs)
chr2 (16-351)||(33519379-33519714)
chr2 (72-349)||(33496244-33496521)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 33519379 - 33519714
Alignment:
Q  16 aaaagaaaatggctatatcgttctttcttagtaactttttccgctcttctgatggcaaggttactagatcccctagtttttggcgagtaccctgctgata 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519379 aaaagaaaatggctctatcgttctttcttagtaactttttccgctcttctgatggcaaggttactagatcccctagtttttggcgagtaccctgctgata 33519478  T
Q  116 tgcgctctattcttgggagccagttgcctaggttctcatctaaggagaagagcctcctaagaggcagcctggacttcattggcatcaataactacggggc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519479 tgcgctctattcttgggagccagttgcctaggttctcatctaaggagaagagcctcctaagaggcagcctggacttcattggcatcaataactacggggc 33519578  T
Q  216 tctctatgccaaggaatgctacctctcaacttgccctctcgaagcagctcgtccaataaaaggctttttgcaaacaacaggaatgagagatggcattcca 315  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  33519579 tctctatgccaaggattgctacctctctacttgccctctcgaagcagctcgtccaataaaaggctttttgcaaacaactgggatgagagatggcattcca 33519678  T
Q  316 attggtgatcaggtactcatatgtagtccaactgtt 351  Q
    ||||||||||||||||||||||||||||||||||||    
T  33519679 attggtgatcaggtactcatatgtagtccaactgtt 33519714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 72 - 349
Target Start/End: Complemental strand, 33496521 - 33496244
Alignment:
Q  72 aaggttactagatcccctagtttttggcgagtaccctgctgatatgcgctctattcttgggagccagttgcctaggttctcatctaaggagaagagcctc 171  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||| | | ||||  | ||||||||||| |||    
T  33496521 aaggttactagatcccctagtttttggtgagtaccctgctgagatgcgctctattcttgggaaccggttgccaaagatctctacgaaggagaagagtctc 33496422  T
Q  172 ctaagaggcagcctggacttcattggcatcaataactacggggctctctatgccaaggaatgctacctctcaacttgccctctcgaagcagctcgtccaa 271  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||    
T  33496421 ctaagaggcagcctggacttcattggcatcaataactatggagctctctatgccaaggattgctacctctctacttgtccactcgaggcagctcgtccaa 33496322  T
Q  272 taaaaggctttttgcaaacaacaggaatgagagatggcattccaattggtgatcaggtactcatatgtagtccaactg 349  Q
    ||| ||||||| || ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33496321 taagaggctttctggaaacaactgggatgagagatggcattccaattggtgatcaggtactcgtatgtagtccaactg 33496244  T

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