View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_low_17 (Length: 288)
Name: NF17437_low_17
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 8255738 - 8255480
Alignment:
| Q |
12 |
aattcttaaaaattgtaattgactcaattaaagaaaattcttaattcgtacaccaattaagtgtaataatcatctttagtgtccttttgtcaatcaccaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8255738 |
aattcttaaaaattgtaattgactcaattaaagaaaattcttaattcgcacaccaattaagtgtaataatcatctttagtgtccttttgtcaatcaccaa |
8255639 |
T |
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| Q |
112 |
ttaagttttactttaatgtgttttgttatatttgnnnnnnnnnnnnnnnnnnnnnaaactcgcgcgcacacgcatatgatgagattaatttaggaaattg |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8255638 |
ttaagttttactttaatgtgttttgttatatttgcacacacacaacacacacacataactcgcgcgcacacacatatgatgagattaatttaggaaattg |
8255539 |
T |
|
| Q |
212 |
ttcatagtatgataagaagcaatgttcaaatagtatatttttgagaagggtaaaattaa |
270 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8255538 |
ttaatagtatgataagaagcaatgttcaaatagtctatttttgagaagggtaaaattaa |
8255480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 8269156 - 8268898
Alignment:
| Q |
12 |
aattcttaaaaattgtaattgactcaattaaagaaaattcttaattcgtacaccaattaagtgtaataatcatctttagtgtccttttgtcaatcaccaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
8269156 |
aattcttaaaaattgtaattgactcaattaaagaaaattcttaattcgcacaccaattaagtgtaataatcatctttaggggccttttgtcaatcaccaa |
8269057 |
T |
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| Q |
112 |
ttaagttttactttaatgtgttttgttatatttgnnnnnnnnnnnnnnnnnnnnnaaactcgcgcgcacacgcatatgatgagattaatttaggaaattg |
211 |
Q |
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|||||||||||||||| | | |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8269056 |
ttaagttttactttaagggggtttggtatatttgcacacacacaacacacacacataactcgcgcgcacacacatatgatgagattaatttaggaaattg |
8268957 |
T |
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| Q |
212 |
ttcatagtatgataagaagcaatgttcaaatagtatatttttgagaagggtaaaattaa |
270 |
Q |
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|| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
8268956 |
ttaatagtatgataagaagcaatggtcaaatagtctatttttgagaagggtaaaattaa |
8268898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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