View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_low_19 (Length: 260)
Name: NF17437_low_19
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_19 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2431276 - 2431017
Alignment:
| Q |
1 |
taatgagagtttactattttgtccaagttaccctacttttttaactgcatcttgatatcaataatatgaaactcagtgtaaaatagttgattctcattag |
100 |
Q |
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| T |
2431276 |
taatgagagtttactattttgtccaagttaccctacttttttaactgcatcttgatatcaataatatgaaactcagtgtaaaatagttgattctcattag |
2431177 |
T |
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| Q |
101 |
acgcaagcgtaaaactgatttacatagaccatgttaaactctaattttatagtacataatatatactttgcctttcgaaataaggcctttgaaatgttaa |
200 |
Q |
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| T |
2431176 |
acgcaagcgtaaaactgatttacatagaccatgttaaactctaattttatagtacataatatatactttgcctttcgaaataaggcctttgaaatgttaa |
2431077 |
T |
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| Q |
201 |
aataaattgatgaataataattgatgaaagagagagaatgacatacagaaccaggggtga |
260 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
2431076 |
aataaattgataaataataattgatgaaagagagagcatgacatacaaaaccaggggtga |
2431017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 2434645 - 2434597
Alignment:
| Q |
213 |
aataataattgatgaaag-agagagaatgacatacagaaccaggggtga |
260 |
Q |
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| T |
2434645 |
aataataattgatgaaaggagagagcatgacatacagaaccaggggtga |
2434597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 1458092 - 1458056
Alignment:
| Q |
224 |
atgaaagagagagaatgacatacagaaccaggggtga |
260 |
Q |
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| T |
1458092 |
atgaaagagagagcatgacatacagaaccaggggtga |
1458056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 2427799 - 2427763
Alignment:
| Q |
224 |
atgaaagagagagaatgacatacagaaccaggggtga |
260 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
2427799 |
atgaaagagagagcatgacatacagaaccaggggtga |
2427763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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