View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17437_low_2 (Length: 512)
Name: NF17437_low_2
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 41894444 - 41894848
Alignment:
| Q |
1 |
aaaattgatcagtacttataacaaactttttcatatgcttgacataacttttgtactcaattcctacgtaaattcatccaattttttgtgatgctttagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41894444 |
aaaattgatcagtacttataacaaactttttcatatgcttgacataacttttgtactcaattcctacgtaaattcatccaattttttgtgatgctttagc |
41894543 |
T |
|
| Q |
101 |
ggggagaaaaaatacatgccaaaaaagaagtgatgattataatgttaataacagactatttgagaaaaatgaatactttgtaacattgtccaatctttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41894544 |
ggggagaaaaaatacatgccaaaaaagaagtgatgattataatgttaataacagactatttgagaaaaatgaatactttgtaacattgtccaatctttag |
41894643 |
T |
|
| Q |
201 |
tacactcaaacagcacgaataaatgaaaatgagtgaggacatcaccatatcgtgtttcgttggaatatttcaaaatagtcgaacgaaatttgtggactaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
41894644 |
tacactcacacagcacgaataaatgaaaatgagtgaggacatcaccatatcgtgtttcgttggaatatttcaaaatagtcgaaccaaatttgttgactaa |
41894743 |
T |
|
| Q |
301 |
aaaggttatgactttaacaaacctacatgcttaataaactgcctttgcatagaagaaggagaataaagacgggggttttataaattagagttcatgtttg |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41894744 |
aaaggtaatgactttaacaaacctacatgcttaataaactgcctttgcatagaagaaggagaataaagacgggggttttataaattagagttcatgtttg |
41894843 |
T |
|
| Q |
401 |
gcaaa |
405 |
Q |
| |
|
|||| |
|
|
| T |
41894844 |
ccaaa |
41894848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 41894882 - 41894937
Alignment:
| Q |
439 |
cgggtctcgaactgagttccttgaggttgaagagagtttctctcaaccacgtgact |
494 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
41894882 |
cgggtctcaaaccgagttcctcgaggttgaaaagagtttctctcaaccacgtgact |
41894937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 3 - 344
Target Start/End: Complemental strand, 36758964 - 36758624
Alignment:
| Q |
3 |
aattgatcagtacttataacaaactttttcatatgcttgacataacttttgtactcaattcctacgtaa-attcatccaattttttgtgatgctttagcg |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||| || |||||||| | ||| ||| ||| | |||| |||||||||||||||||||||| |
|
|
| T |
36758964 |
aattgatcagtactgataactaactttttcatctgcttgatgtagcttttgtatttcattggtacataagactcatacaattttttgtgatgctttagct |
36758865 |
T |
|
| Q |
102 |
gggagaaaaaatacatgccaaaaaagaagtgat-gattataatgttaataacagactatttgagaaaaatgaatactttgtaacattgtccaatctttag |
200 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||| ||||| ||||| ||||| || || ||||||| |||||||||||||||| ||||||||| || |
|
|
| T |
36758864 |
gggagaaacaatacaagccagaaaagaagtgatagattagaatgtgaataataggcttgccgagaaaactgaatactttgtaacactgtccaatcgacag |
36758765 |
T |
|
| Q |
201 |
tacactcaaacagcacgaataaatgaaaatgagtgaggacatcaccatatcgtgtttcgttggaatatttcaaaatagtcgaacgaaatttgtggactaa |
300 |
Q |
| |
|
|||||| |||| || |||| || ||||| |||||||||| |||| ||||||| || ||||||| |||||| ||| |||||||||| ||||| |
|
|
| T |
36758764 |
tacacttaaactgcgcgaagtaagaaaaataggtgaggacat---catactgtgtttcactgaaatattttaaaatatctgaatgaaatttgtgaactaa |
36758668 |
T |
|
| Q |
301 |
aaaggttatgactttaacaaacctacatgcttaataaactgcct |
344 |
Q |
| |
|
||||| |||| || |||||||||||| ||||||| || |||||| |
|
|
| T |
36758667 |
aaaggctatgcctgtaacaaacctacctgcttaacaacctgcct |
36758624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 55264953 - 55264908
Alignment:
| Q |
442 |
gtctcgaactgagttccttgaggttgaagagagtttctctcaacca |
487 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55264953 |
gtctcgaaccgagttccttgaggttgaagagagtttctctcaacca |
55264908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 4341981 - 4342033
Alignment:
| Q |
439 |
cgggtctcgaactgagttccttgaggttgaagagagtttctctcaaccacgtg |
491 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
4341981 |
cgggtcttgaaccgagtttctcgaggttgaagagagtttctctcaaccacgtg |
4342033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 40773416 - 40773471
Alignment:
| Q |
439 |
cgggtctcgaactgagttccttgaggttgaagagagtttctctcaaccacgtgact |
494 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
40773416 |
cgggtctcgaaccaagttcctcgaggtcgaagagagtttctctcaaccacgtgact |
40773471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 490
Target Start/End: Original strand, 10680112 - 10680162
Alignment:
| Q |
440 |
gggtctcgaactgagttccttgaggttgaagagagtttctctcaaccacgt |
490 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
10680112 |
gggtctcgaaccgagttctttgaggttgaagagagtatctctcaaccacgt |
10680162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 15925888 - 15925934
Alignment:
| Q |
441 |
ggtctcgaactgagttccttgaggttgaagagagtttctctcaacca |
487 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
15925888 |
ggtctcgaaccgagtttctcgaggttgaagagagtttctctcaacca |
15925934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University