View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17437_low_20 (Length: 258)
Name: NF17437_low_20
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 43396881 - 43397072
Alignment:
| Q |
30 |
gagaagaaataataccaaactagtcattgacattttcaaattgaagataaataaatcctctgttataatgagttcaggactaatttgtctccagtttgaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
43396881 |
gagaagaaataataccaaactagtcattgacattttcaaattgaagataaataagtcctcttgtataatgagttcaggactaatttatccccagtttgaa |
43396980 |
T |
|
| Q |
130 |
aatatcaaggactactttaatgnnnnnnnaagtaatggattaaattagaccgtgataaaattgtgagagactaaattgtgtctttactctag |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43396981 |
aatatcaaggactactttaatgtttttttaagtaatggattaaactaggccgtgataaaattgtgagagactaaattgtgtctttactctag |
43397072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 32358539 - 32358605
Alignment:
| Q |
36 |
aaataataccaaactagtcattgacattttcaaattgaagataaataaat-cctctgttataatgag |
101 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| || |||||| | |||||||||||||||| |
|
|
| T |
32358539 |
aaataataccaaactagcccttgacattttcaaattggggacaaataagtccctctgttataatgag |
32358605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 38713335 - 38713375
Alignment:
| Q |
167 |
gattaaattagaccgtgataaaattgtgagagactaaattg |
207 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
38713335 |
gattgaattggaccgtgataaaattgtgagagattaaattg |
38713375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University