View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_low_22 (Length: 243)
Name: NF17437_low_22
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 5576591 - 5576811
Alignment:
| Q |
11 |
cagagacatagtctaattctaa-gcatggacataattagtgtccaattatttacaactaacaaacatcttnnnnnnnnnn-tcaataactaagaagaaaa |
108 |
Q |
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| T |
5576591 |
cagagatatagtctaattctaacgcatgaacataattagtgtccaattatttacaactaagaagcatctttaaaaacaaaatcaataactaagaagaaaa |
5576690 |
T |
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| Q |
109 |
tgaatgaaactaaatcatggcttagtcatggagatagcaaattaactttaaattattgtcaaatcatagtaaattcacattaaatattctatactctgca |
208 |
Q |
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| T |
5576691 |
tgaatgaaactatatcatggcttagtcatggacatagcaaattaacttttaattattgtcaaatcatagtaaatttacattagattttctatactttgcg |
5576790 |
T |
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| Q |
209 |
aaatatgctaaggaagagact |
229 |
Q |
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||||||| |||||||||||| |
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| T |
5576791 |
aaatatgtcaaggaagagact |
5576811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 46675285 - 46675377
Alignment:
| Q |
98 |
taagaagaaaatgaatgaaactaaatcatggcttagtcatggagatagcaaattaactttaaattattgtcaaatcatagtaaattcacatta |
190 |
Q |
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|||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||| | |||||| ||||| |||||||||||| ||||||| |
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| T |
46675285 |
taagaagaaaattaatgaagctaaatcatgacttagtcatggacatagcaaattaacatcaaattaatgtcatatcatagtaaatccacatta |
46675377 |
T |
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