View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_low_24 (Length: 227)
Name: NF17437_low_24
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 52767392 - 52767597
Alignment:
| Q |
13 |
catcactgtgtttatacctgtaaattgctgaaaagcctgtacaatcaataaaaatgggatgctataagaaactaactcgaatacttttaaaaggttcaga |
112 |
Q |
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| T |
52767392 |
catcactgtgtttatacctgtaaattgctgaaaagcctgtacaatcaataaatatgggatgctataagaaactaactcgaatacttttaaaaagttcaga |
52767491 |
T |
|
| Q |
113 |
accgaatacaccaatatgataccagaatctaagcacggctaatcacgtatatattgcattaagcaactagaaaataatgataatctgaataaataagatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
52767492 |
accgaatacaccaatatgataccagaatctaagcatggctgatcacgtatatattgcattaagcaactagaaaataatgtgaagctgaataaataagatg |
52767591 |
T |
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| Q |
213 |
atgatg |
218 |
Q |
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|||||| |
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| T |
52767592 |
atgatg |
52767597 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 392465 - 392422
Alignment:
| Q |
13 |
catcactgtgtttatacctgtaaattgctgaaaagcctgtacaa |
56 |
Q |
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|||||| ||||||||||||||||| |||||||||||||| |||| |
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| T |
392465 |
catcaccgtgtttatacctgtaaactgctgaaaagcctgcacaa |
392422 |
T |
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