View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_low_4 (Length: 419)
Name: NF17437_low_4
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 161 - 413
Target Start/End: Original strand, 8841847 - 8842100
Alignment:
| Q |
161 |
atatatatgttacagtatgaatgtgtacacatttacatgttgaaatgatgcttcatgattctgttactgttagaagaagttggtttcatgaaaatttctt |
260 |
Q |
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| T |
8841847 |
atatatatgttacagtatgaatgtgtacacatttacatgttgaaatgatgcttcatggttctgttactgttagaagaagttggtctcatgaaaatttctt |
8841946 |
T |
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| Q |
261 |
atcgttaagcgttcggttttgtttgtaagcaggatataattcactttagtgtttctgccaagggcctctcttgagcctgtgtaattttttcatacttttg |
360 |
Q |
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| T |
8841947 |
atcgttaagcgttcggttttgtttgtaagcaggatataattcactttagtgtttctgccaagggcctctcttgagcctgtgtaattttttcatacttttg |
8842046 |
T |
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| Q |
361 |
atcaatgtaatgtaattttttccttgactc-agtactgtttttgttcatctcac |
413 |
Q |
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| T |
8842047 |
atcaatgtaatgtaatttttcccttgactcaagtactgtttttgttcatatcac |
8842100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 8841705 - 8841819
Alignment:
| Q |
21 |
aaagcctcatcattctattggaagaaggcgataataacttcaactaatcaacattcagttacacctcaccaatggttgtatatgatccatacaccagtac |
120 |
Q |
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| T |
8841705 |
aaagcctcatcattctattggaagaaggcgataataacttcaactaatcaacattcagttacacctcaccaatggttgtatatgatccatacaccagtac |
8841804 |
T |
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| Q |
121 |
atatcatataatcag |
135 |
Q |
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| T |
8841805 |
atatcatataatcag |
8841819 |
T |
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