View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17437_low_5 (Length: 394)
Name: NF17437_low_5
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17437_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 5171240 - 5170855
Alignment:
| Q |
1 |
gtcccacttaagattgtgatattaggcgagattttgaatatgagggtatctaataggtatcaaattttgaaaatatatttatctatacatagttatgtta |
100 |
Q |
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|||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
5171240 |
gtcccacttaagattgtgatattaagcgagactttgagtatgagggtatctaataggtaccaaattttgaaaatatatttatatatacatagttatgtta |
5171141 |
T |
|
| Q |
101 |
aaacaaactaaattccaatgtnnnnnnngtgtggttaattccctttatccaatagcttcatannnnnnncataaaaaaccaacaaatatagacatccaaa |
200 |
Q |
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|||||||||||||||| |||| ||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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| T |
5171140 |
aaacaaactaaattcctatgtaaaaaaagtgtggt-aattccctttatccaatagtttcatatttttttcatcaaaaaccaacaaatatagacatccaaa |
5171042 |
T |
|
| Q |
201 |
agtaaacaatttatggagcattgcataaatggcttaaactctattaaaattcacttttgttatgattcccaaaattgttgcagcagcttataacatcgac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5171041 |
agtaaacaatttatggagcattgcataaatggcttaaactctattaaaattcacttttgttatgattcccaaaattgttgcagcagcttataacatcgac |
5170942 |
T |
|
| Q |
301 |
taatcttcatataaagtcctaatcccttggtaagaccaatactgatacatttgaagtcgcacaattgtatgtgagccattcatctca |
387 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5170941 |
taatcttcatataaagtcctaatcccttggtaaaaccaatactaatacatttgaagtcgcacaattgtatgtgagccattcatctca |
5170855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 174 - 357
Target Start/End: Original strand, 8606655 - 8606835
Alignment:
| Q |
174 |
aaaaaccaacaaatatagacatccaaaagtaaacaatttatggagcattgcataaatggcttaaactctattaaaattcacttttgttatgattcccaaa |
273 |
Q |
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| T |
8606655 |
aaaaaccaacaaatatagacatccaaaagtaaacaacttatggagcattgcataaatggcttaaactctattaaaattcacttttattatgattcccaaa |
8606754 |
T |
|
| Q |
274 |
attgttgcagcagcttataacatcgactaatcttcatataaagtcctaatcccttggtaagaccaatactga-tacatttgaagt |
357 |
Q |
| |
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||||||||||||||||||| |||||||| | |||| ||||| ||||||||||||||| |||||||| | |||||||||||| |
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| T |
8606755 |
attgttgcagcagcttatagaatcgacta----taatatgaagtcataatcccttggtaaggccaatactaattacatttgaagt |
8606835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 191 - 339
Target Start/End: Original strand, 905289 - 905439
Alignment:
| Q |
191 |
gacatccaaaagtaaacaatttatggagcattgcataaatggcttaaactctattaaaattcacttttgttatgattcccaaaattgttgcagcagctta |
290 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
905289 |
gacatacaaaagtaaacaacttatggagcattgcataaatggcttaaactctattaaaattcacttttgttatgattcccaaaattgttgcaggagctta |
905388 |
T |
|
| Q |
291 |
taacatcgac--taatcttcatataaagtcctaatcccttggtaagaccaa |
339 |
Q |
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|| ||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
905389 |
tagcatcgactataatcttcatataaagtcataatcccttggtaagaccaa |
905439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 905208 - 905286
Alignment:
| Q |
174 |
aaaaaccaacaaatatagacatccaaaagtaaacaatttatggagcattgcataaatggcttaaactctattaaaattc |
252 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
905208 |
aaaaatcaacaaatatagacatcaaaaagtaaacaacttatggagcattgcataaatggcttaaactttattaaaattc |
905286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 905070 - 905132
Alignment:
| Q |
39 |
tatgagggtatctaataggtatcaaattttgaaaatatatttatctatacatagttatgttaaaa |
103 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||| ||| ||||||||||| |||||||| |
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|
| T |
905070 |
tatgaaggtatctaataggtaccaaattttaaaaatatactta--tatacatagttttgttaaaa |
905132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 8606523 - 8606579
Alignment:
| Q |
45 |
ggtatctaataggtatcaaattttgaaaatatatttatctatacatagttatgttaaaa |
103 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||| ||||||||||| |||||||| |
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| T |
8606523 |
ggtatctaataggtaccaaattttaaaaatatactta--tatacatagttttgttaaaa |
8606579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 48763517 - 48763133
Alignment:
| Q |
1 |
gtcccacttaagattgtgatattaggcgagattttgaatatgagggtatctaataggtatcaaattttgaaaatatatttatctatacatagttatgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
48763517 |
gtcccacttaagattgtgatattaagcgagactttgagtatgagggtatctaataggtaccaaattttgaaaatatatttatatatacatagttatgtta |
48763418 |
T |
|
| Q |
101 |
aaacaaactaaattccaatgtnnnnnnngtgtggttaattccctttatccaatagcttcatannnnnnncataaaaaaccaacaaatatagacatccaaa |
200 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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| T |
48763417 |
aaacaaactaaattcctatgtaaaaaaagtgtggt-aattccctttatccaatagtttcatatttttt-catcaaaaaccaacaaatatagacatccaaa |
48763320 |
T |
|
| Q |
201 |
agtaaacaatttatggagcattgcataaatggcttaaactctattaaaattcacttttgttatgattcccaaaattgttgcagcagcttataacatcgac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48763319 |
agtaaacaatttatggagcattgcataaatggcttaaactctattaaaattcacttttgttatgattcccaaaattgttgcagcagcttataacatcgac |
48763220 |
T |
|
| Q |
301 |
taatcttcatataaagtcctaatcccttggtaagaccaatactgatacatttgaagtcgcacaattgtatgtgagccattcatctca |
387 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48763219 |
taatcttcgtataaagtcctaatcccttggtaaaaccaatactaatacatttgaagtcgcacaattgtatgtgagccattcatctca |
48763133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 10641411 - 10641532
Alignment:
| Q |
1 |
gtcccacttaagattgtgatattaggcgaga-ttttgaatatgagggtatctaataggtatcaaattttgaaaatatatttatctatacatagttatgtt |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
10641411 |
gtcccacttaagattgtgatattaagcgagacttttgagtatgagggtatctaataggtaccaaattttgaaaatatatttatatatacatagttatgtt |
10641510 |
T |
|
| Q |
100 |
aaaacaaactaaattccaatgt |
121 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
10641511 |
aaaacaaactaaattccaatgt |
10641532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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