View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17437_low_8 (Length: 361)

Name: NF17437_low_8
Description: NF17437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17437_low_8
NF17437_low_8
[»] chr7 (6 HSPs)
chr7 (23-350)||(4189970-4190311)
chr7 (206-345)||(4193095-4193234)
chr7 (202-345)||(4247182-4247325)
chr7 (206-345)||(4234604-4234743)
chr7 (206-345)||(4210940-4211079)
chr7 (208-345)||(4251617-4251754)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 4190311 - 4189970
Alignment:
Q  23 gaaaataacaaactaagcaacatatatttaaataatatcaaaagcataacttattaaaattaggtttacaagtgaatattatataataaaatctaaaagg 122  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190311 gaaaataacaaacgaggcaacatagatttaaataatatcaaaagcataacttattaaaattaggtttacaagtgaatattatataataaaatctaaaagg 4190212  T
Q  123 actcaattcacttaaaccctaaaaagatcccaca--------------tcttattatctaacacattgcacttgcatcccaaaatcaattggagcatagt 208  Q
    |||| ||||||||||||||||||||||||| |||              ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4190211 actcgattcacttaaaccctaaaaagatccaacaacatgagcccgacatcttattatctaacacattgcacttgcatcccacaatcaattggagcatagt 4190112  T
Q  209 ccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgctttctgcgaaaccaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190111 ccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgctttctgcgaaaccaa 4190012  T
Q  309 tggttaaacctctatccaccgacactatctccaccttctttg 350  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  4190011 tggttaaacctctatcaaccgacactatctccaccttctttg 4189970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 4193234 - 4193095
Alignment:
Q  206 agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgctttctgcgaaac 305  Q
    |||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||| ||||    
T  4193234 agtccttcaaaaaagaaactgctaaagagatccattacaagcttattaagaacaagctcaacttcaaccccaccattgccatctttgctctctgccaaac 4193135  T
Q  306 caatggttaaacctctatccaccgacactatctccacctt 345  Q
    |||||  ||||||||||||||| || ||| || |||||||    
T  4193134 caatgtataaacctctatccactgatactgtcaccacctt 4193095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 345
Target Start/End: Complemental strand, 4247325 - 4247182
Alignment:
Q  202 gcatagtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgctttctgcg 301  Q
    ||||| ||||||| |||||||| ||||||||| || ||||||||| |||||||||||||| |||| |||||| |||||| | ||||||||||| |||||     
T  4247325 gcataatccttcatgaaacaaagtgctaaagaaattcattacatgtttattaagaacaagcccaacttcaactccaccacttccatctttgctctctgcc 4247226  T
Q  302 aaaccaatggttaaacctctatccaccgacactatctccacctt 345  Q
    |||||||||| |||||||||||| | ||||||||| ||||||||    
T  4247225 aaaccaatggctaaacctctatcaatcgacactatttccacctt 4247182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 4234743 - 4234604
Alignment:
Q  206 agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgctttctgcgaaac 305  Q
    |||||||||| ||||||| | |||||||||| ||||||||| |||||||||||||| |||| |||||  ||||| || ||||||||||| || || |||     
T  4234743 agtccttcaacaaacaaagttctaaagagattcattacatggttattaagaacaagcccaacttcaattccacctttaccatctttgctctccgccaaag 4234644  T
Q  306 caatggttaaacctctatccaccgacactatctccacctt 345  Q
    |||||||||||||||||||| | || ||||||||||||||    
T  4234643 caatggttaaacctctatccgcagaaactatctccacctt 4234604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 4211079 - 4210940
Alignment:
Q  206 agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgctttctgcgaaac 305  Q
    |||||||||||||||||  |  ||||||||||||||||||| ||||| |||||||| |||| |||||  ||||| || ||||||||||| ||||| |  |    
T  4211079 agtccttcaagaaacaacgttttaaagagatccattacatgtttatttagaacaagcccaacttcaattccacctttaccatctttgctctctgccaggc 4210980  T
Q  306 caatggttaaacctctatccaccgacactatctccacctt 345  Q
    |||| |||||||||||||| ||||| ||||||||||||||    
T  4210979 caattgttaaacctctatctaccgaaactatctccacctt 4210940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 345
Target Start/End: Complemental strand, 4251754 - 4251617
Alignment:
Q  208 tccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgctttctgcgaaacca 307  Q
    |||||||||||||||| ||||||||| |||||||||| | ||||||||| |||| |||| ||| | ||| || || | ||||||||| ||||| ||||||    
T  4251754 tccttcaagaaacaaagtgctaaagatatccattacaggtttattaagagcaagcccaacttctatccctcctttactatctttgctctctgccaaacca 4251655  T
Q  308 atggttaaacctctatccaccgacactatctccacctt 345  Q
    || |||| ||||||||| |  ||||| ||||| |||||    
T  4251654 attgttacacctctatctattgacacgatctcaacctt 4251617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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