View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17438_high_1 (Length: 272)

Name: NF17438_high_1
Description: NF17438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17438_high_1
NF17438_high_1
[»] chr4 (9 HSPs)
chr4 (1-270)||(36940386-36940655)
chr4 (94-270)||(35097822-35097998)
chr4 (94-270)||(35098111-35098287)
chr4 (94-266)||(35107004-35107176)
chr4 (94-266)||(35072684-35072856)
chr4 (94-263)||(36296457-36296626)
chr4 (94-207)||(36935861-36935975)
chr4 (95-262)||(36961377-36961545)
chr4 (169-215)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (94-266)||(24040740-24040912)
chr6 (94-270)||(24014183-24014359)
[»] chr5 (1 HSPs)
chr5 (139-237)||(34919131-34919229)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 36940386 - 36940655
Alignment:
Q  1 ttacacacacatgacacaaaacttattacattaaagcaaagaaacacaattctaaactgcaaaacaaagtaagagaactcaatttgtacttagccagaga 100  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  36940386 ttacacacacagaacacaaaacttattacattaaagcaaagaaacacaattctaaactgcaaaacaaagtaagagaactcaatttgtactttaccagaga 36940485  T
Q  101 tatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatccattttagc 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36940486 tatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatccattttagc 36940585  T
Q  201 attctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36940586 attctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttc 36940655  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 35097998 - 35097822
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 193  Q
    |||||||| |||||||  ||||| ||| | ||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||    
T  35097998 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 35097899  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttc 270  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  35097898 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttc 35097822  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 35098287 - 35098111
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 193  Q
    |||||||| |||||||  ||||| ||| | ||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||    
T  35098287 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 35098188  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttc 270  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  35098187 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttc 35098111  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 266
Target Start/End: Complemental strand, 35107176 - 35107004
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 193  Q
    |||||||| ||||||| ||| |||||| | ||||| |||||||  ||||| |||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  35107176 ccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgatcca 35107077  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatc 266  Q
    |||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  |||||||||||||    
T  35107076 ttttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatc 35107004  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 266
Target Start/End: Original strand, 35072684 - 35072856
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 193  Q
    |||||||| || ||||  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  35072684 ccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatcca 35072783  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatc 266  Q
    |||| |||||||| ||  |||| || ||||||||||| || |||||||||||||||||  |||||||||||||    
T  35072784 ttttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatc 35072856  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 263
Target Start/End: Original strand, 36296457 - 36296626
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 193  Q
    |||||||| ||||| |  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  36296457 ccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatcca 36296556  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattg 263  Q
    | || ||||| || |||||||| || |||||||| ||||| |||||||||||||||||| ||||||||||    
T  36296557 tcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattg 36296626  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 36935861 - 36935975
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctcc-attgcagctttcatttgatcc 192  Q
    ||||||||||||||||| || |||||| | ||||||| ||||| ||  ||||| || ||||||||||| ||||||||| ||||||||||||| |||||||    
T  36935861 ccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgatcc 36935960  T
Q  193 attttagcattctca 207  Q
    |||||||||||||||    
T  36935961 attttagcattctca 36935975  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 36961545 - 36961377
Alignment:
Q  95 cagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgca-gctttcatttgatcca 193  Q
    |||||||||||||||| |||||| || | || || |  ||||  ||||| | ||| ||||||||||| |||||||||  ||   || ||||  |||||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatcca 36961446  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccatt 262  Q
    | ||||||||||| | |||||| ||  |||||||||| |||||||||||| ||||||||  ||||||||    
T  36961445 tcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccatt 36961377  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 36953720 - 36953766
Alignment:
Q  169 tccattgcagctttcatttgatccattttagcattctcaggcaatct 215  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatct 36953766  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 266
Target Start/End: Original strand, 24040740 - 24040912
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 193  Q
    ||||||||||||||||| || |||| | | |||||||  ||||  ||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  24040740 ccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgatcca 24040839  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatc 266  Q
    |||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  |||||||||||||    
T  24040840 ttttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatc 24040912  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 94 - 270
Target Start/End: Original strand, 24014183 - 24014359
Alignment:
Q  94 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 193  Q
    |||||||| || ||||  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  24014183 ccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatcca 24014282  T
Q  194 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttc 270  Q
    |||| ||||| || ||||| || ||||||||||||||||| || ||||| ||||||||  |||||||||||||||||    
T  24014283 ttttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttc 24014359  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 34919229 - 34919131
Alignment:
Q  139 ttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaacttccca 237  Q
    ||||| ||||| ||||| ||||| |||||||||||  ||||||| |  |||||||||||| ||||||||||||| || || |||||||| |||||||||    
T  34919229 ttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcataaacttccca 34919131  T

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