View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_high_1 (Length: 682)
Name: NF17439_high_1
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Original strand, 42286993 - 42287510
Alignment:
| Q |
16 |
atcaaaattatgaatgagggcctctaaaatattatgaaagatgattagtgttgagaatagtgaatactttaatagattatccatttaaaaatcatgattg |
115 |
Q |
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| T |
42286993 |
atcaaaattatgaatgagggcctctaaaatattatgaaagattattagtgttgagaatagtgcatactttaatagattatccatttaaaaatcatgattg |
42287092 |
T |
|
| Q |
116 |
tttgtgaggttctatatttgtcagtttcttaacaattaacaccaattttatctgtaggattgtagctacagacaaatatagacaaatacagcctacacca |
215 |
Q |
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| T |
42287093 |
tttgtgaggttctatatttgtcagtttcttaacaattaacaccaattttatctgtagg-ttgtagctacagacaaatatagacaaatacagcctacacca |
42287191 |
T |
|
| Q |
216 |
atttttctctatatttggctctaaatataaattataaaaggaaccatattttcaatggatcaagcacaatagtcaattagtttttcattcatggctctga |
315 |
Q |
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| T |
42287192 |
atttttctctatatttggctctaaatataaattataaaaggaaccatattttcaatggatcaagcacaatagtcaattagtttttcattcatggctctga |
42287291 |
T |
|
| Q |
316 |
atatgaaattattcagagcctttttaattctcac---------tctcttcaccacgttaccatctgctgaggttgtttcaccaattcttgatgtttcttc |
406 |
Q |
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| T |
42287292 |
atatgaaattattcagagcctttttaattctcactctcttcaatctcttcaccacgttaccatctgctgaggttgtttcaccaattcttgatgtttcttc |
42287391 |
T |
|
| Q |
407 |
acttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggta-ctcattatttcaatgagaccttcttacagatttga |
505 |
Q |
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| T |
42287392 |
acttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggtacctcattatttcaatgagaccttcttacagatttga |
42287491 |
T |
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| Q |
506 |
attcaatttcagtcgggcc |
524 |
Q |
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| T |
42287492 |
attcaatttcagtcgggcc |
42287510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 589 - 663
Target Start/End: Original strand, 42287575 - 42287649
Alignment:
| Q |
589 |
gaacatattaaaaatcccaccaaatttaagctaaatcaaggtaattgaattgaacaatttggttgatgtcatgat |
663 |
Q |
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| T |
42287575 |
gaacatattaaaaatcccaccaaatttaagctaaatcaaggtaattgaattgaacaatttggttgatgtcatgat |
42287649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 375 - 470
Target Start/End: Complemental strand, 42159767 - 42159672
Alignment:
| Q |
375 |
gaggttgtttcaccaattcttgatgtttcttcacttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggta |
470 |
Q |
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| T |
42159767 |
gaggctgtttcaccaattcttgatgtttcttcacttaatcgaactagttttcccacaagcttcatttttgggacagggtcctcatcataccaggta |
42159672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 323 - 470
Target Start/End: Complemental strand, 42169989 - 42169842
Alignment:
| Q |
323 |
attattcagagcctttttaattctcactctcttcaccacgttaccatctgctgaggttgtttcaccaattcttgatgtttcttcacttaatcgaactagt |
422 |
Q |
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| T |
42169989 |
attattcagagagcttttcattctcactctcttcatcacactatcatttgcagaggttgtttcaccaattcttgatgtttcctcactcaatcgaactagc |
42169890 |
T |
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| Q |
423 |
tttcctacaaacttcatttttgggacagcatcctcagcataccaggta |
470 |
Q |
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| T |
42169889 |
tttccaaccggcttcatttttgggacagcatcatcatcataccaggta |
42169842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 42160023 - 42159964
Alignment:
| Q |
175 |
ttgtagctacagacaaatatagacaaatacagcctacaccaattttt--ctctatatttg |
232 |
Q |
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| T |
42160023 |
ttgtagctacagataaatatagacgaatacaacctacaccaatttttggctctatatttg |
42159964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 42159622 - 42159571
Alignment:
| Q |
471 |
ctcattatttcaatgagaccttcttac-agatttgaattcaatttcagtcgg |
521 |
Q |
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| T |
42159622 |
ctcattatttcaatgagaccttcttacaagatttgaattcaatctcactcgg |
42159571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 42159921 - 42159862
Alignment:
| Q |
210 |
acaccaatttttctctatatttggctctaaata-taaattataaaaggaaccatattttc |
268 |
Q |
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| T |
42159921 |
acaccaatttttctctatatttggctctaaatatttaatcataaaaggaacaatactttc |
42159862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 30358440 - 30358519
Alignment:
| Q |
390 |
attcttgatgtttcttcacttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggt |
469 |
Q |
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| T |
30358440 |
attctcgatgttacttcattaaatcgaagtagttttcctacaaacttcatctttggagcatcaaactcggcataccaggt |
30358519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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