View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_high_11 (Length: 353)
Name: NF17439_high_11
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 26147833 - 26147499
Alignment:
| Q |
1 |
tctgtttcttagtacctatgttttcaaaacgtaccaaaaataatacttttgtaattatgaattcagctaccttaaaacaaatccaggttcgaaacaattt |
100 |
Q |
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| T |
26147833 |
tctgtttcttagtacctatattt-caaaacgtacgaaaaataatacttttgtaattatgaattcagctaccttaaaacaaatccaggttcgaaacaattt |
26147735 |
T |
|
| Q |
101 |
ggaattttttaaatcttggtaaaagttttgaacggctttgggagagaaatggaaaagaaaagtgacaataaataaatgccataaatgtatgataagcatg |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26147734 |
ggaattttttaaatcttggtaaaagtttagaacggctttgggagagaaatggaaaggaaaagtgacaataaataaatgccataaatgtatgttaagcatg |
26147635 |
T |
|
| Q |
201 |
ataattgtggtatgttcctttaaatattagaaaattctaaacgaagtttctttttgatgtcttttcagtattttatgtaacaaactctatgctaaaaaca |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26147634 |
ataattgtggtatgttcctttaaataatagaaaattctaaacgaagtttctatttgatgtcttttcagtattttatgtaacaaactctatgctaaaaaca |
26147535 |
T |
|
| Q |
301 |
aaaggaaaatatttaaaatcaagctactataatctg |
336 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
26147534 |
aaagtaaaatatttaaaatcaagctactataatctg |
26147499 |
T |
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