View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_high_12 (Length: 351)
Name: NF17439_high_12
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 11698954 - 11699286
Alignment:
| Q |
1 |
aaacctacaaattagaagtttatacattcaagtttagattcaaagatccggattttagtcttcttgatgtttttggaggaagataaatgtcaatacgtcc |
100 |
Q |
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| T |
11698954 |
aaacctacaaattagaagtttatacattcaagtttagattcaaagatccggattttagtcttcttgatatttttggaggaagataaatgtcaatacgtct |
11699053 |
T |
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| Q |
101 |
gtaaatatttctctatttgtaagattttctctaccttgaactgagacatcatcctctcactttaaatttatctcataaaagaaattaaataaaaagagtt |
200 |
Q |
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| T |
11699054 |
gtaaatatttctctatttgtaagattttctctaccttgaactgagacatcatcctctcactttaaatttatctcataaaagaaattaaataaaaagagtt |
11699153 |
T |
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| Q |
201 |
ttaaaatttcatatcacaccaaagtgaattactatataatcttatttttaagtatactactactattaatccttcaaagaagtatactgtggactacaat |
300 |
Q |
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| T |
11699154 |
ttaaaatttcatatcacaccaaagtgaattactatataatcttatttttaagtatactactactattaatccttcaaagaagtatactgtggactacaat |
11699253 |
T |
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| Q |
301 |
atttagagaattgatgttctcacattacataag |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11699254 |
atttagagaattgatgttctcacattacataag |
11699286 |
T |
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