View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17439_high_18 (Length: 243)
Name: NF17439_high_18
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_high_18 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 35348789 - 35348556
Alignment:
| Q |
1 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35348789 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
35348690 |
T |
|
| Q |
101 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35348689 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcat |
35348590 |
T |
|
| Q |
201 |
tactgcaagttcaatgaaaatttaagtttcatct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35348589 |
tactgcaagttcaatgaaaatttaagtttcatct |
35348556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2275866 - 2275633
Alignment:
| Q |
1 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2275866 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
2275767 |
T |
|
| Q |
101 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2275766 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcat |
2275667 |
T |
|
| Q |
201 |
tactgcaagttcaatgaaaatttaagtttcatct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2275666 |
tactgcaagttcaatgaaaatttaagtttcatct |
2275633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39347357 - 39347124
Alignment:
| Q |
1 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39347357 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
39347258 |
T |
|
| Q |
101 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39347257 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcat |
39347158 |
T |
|
| Q |
201 |
tactgcaagttcaatgaaaatttaagtttcatct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39347157 |
tactgcaagttcaatgaaaatttaagtttcatct |
39347124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4013200 - 4012967
Alignment:
| Q |
1 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4013200 |
agaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttc |
4013101 |
T |
|
| Q |
101 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4013100 |
ataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcat |
4013001 |
T |
|
| Q |
201 |
tactgcaagttcaatgaaaatttaagtttcatct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4013000 |
tactgcaagttcaatgaaaatttaagtttcatct |
4012967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 25880049 - 25879831
Alignment:
| Q |
16 |
ataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25880049 |
ataagttcttcaaaaatcatgactactactcacattcacttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaatatgtct |
25879950 |
T |
|
| Q |
116 |
taaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaat |
215 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25879949 |
taaaatgggcacatgaaaagggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagttcaat |
25879850 |
T |
|
| Q |
216 |
gaaaatttaagtttcatct |
234 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
25879849 |
gaaaattaaagtttcatct |
25879831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 10789346 - 10789569
Alignment:
| Q |
12 |
tgtcataagttcttcaaaaatcatgactactacccacaatcactttt-ttctagagaaatacttagtcaaccctcctctttcataagttcataggaaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10789346 |
tgtcataagttcttcaaaaatcatgactactacccacattcactttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaata |
10789445 |
T |
|
| Q |
111 |
tgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagt |
210 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10789446 |
tgtcttaaaatgggcacatgaaaaaggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagt |
10789545 |
T |
|
| Q |
211 |
tcaatgaaaatttaagtttcatct |
234 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
10789546 |
tcaatgaaaattaaagtttcatct |
10789569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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