View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_high_19 (Length: 226)
Name: NF17439_high_19
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_high_19 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 47652235 - 47652435
Alignment:
| Q |
9 |
ataattctactaaaaacccttaattctactcatggaccatacccaagaaaaaacccaaataaaaatcataacttaattaaagaactcaccaattaatgga |
108 |
Q |
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| T |
47652235 |
ataattctaccaaaaacccttaattctactcatggaccatacccaagaaaaaacccaaataaaaatcataacttaattaaagaactcaccaattaatgga |
47652334 |
T |
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| Q |
109 |
gagatggcttggaatttgaggaagaacaagtgattgaaaacaaaacaataattggaacatttttctttatgaacgaaattcaaagatggaggaggaaaga |
208 |
Q |
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| T |
47652335 |
gagatggcttggaatttgaggaagaacaagtgattgaaaacaaaacaataattggaacatttttctttatgaacgaaattcaaagatggaggaggaaaga |
47652434 |
T |
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| Q |
209 |
t |
209 |
Q |
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| T |
47652435 |
t |
47652435 |
T |
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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 38752975 - 38752865
Alignment:
| Q |
23 |
aacccttaattctactcatggaccatacccaagaaaaaacccaaataaaaatcataacttaattaaagaactcaccaattaatggagagatggcttggaa |
122 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| || || |||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
38752975 |
aacccttatttctactcatggaccatacccaagacaaaagcccaaacaaaatcataatttaattaaagaactcaccaattaatgaagagaaagcttggaa |
38752876 |
T |
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| Q |
123 |
tttgaggaaga |
133 |
Q |
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| T |
38752875 |
tttgaggaaga |
38752865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 38752860 - 38752809
Alignment:
| Q |
115 |
gcttggaatttgaggaagaacaagtgattgaaaacaaaacaataattggaac |
166 |
Q |
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| T |
38752860 |
gcttggaatttgatgaagaacaagtgattgcaaacaatacaagaattggaac |
38752809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 95094 - 95166
Alignment:
| Q |
64 |
caaataaaaatca-taacttaattaaagaactcaccaattaatggagagatggcttggaatttgaggaagaacaa |
137 |
Q |
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| T |
95094 |
caaataaaattcaataacttaattaaagaactcaccaattaatg--gagatagattggaatttgaggaagaacaa |
95166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 94196 - 94237
Alignment:
| Q |
12 |
attctactaaaaacccttaattctactcatggaccatacccaa |
54 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
94196 |
attcaactaaaaacccttaattctactcat-gaccatacccaa |
94237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 29994506 - 29994462
Alignment:
| Q |
81 |
ttaattaaagaactcaccaattaatggagagatggcttggaattt |
125 |
Q |
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| T |
29994506 |
ttaattaaagaactcaccgattaatgaagagaaagcttggaattt |
29994462 |
T |
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