View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_high_9 (Length: 387)
Name: NF17439_high_9
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 27804318 - 27804673
Alignment:
| Q |
18 |
atattcatcatttcatgattactatcaaccatttgatgtctaagggattgcaacatggtattaataatagaagcattcacatgatttggtatataaatat |
117 |
Q |
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| T |
27804318 |
atattcatcatttcatgattactatcatccatttgatgtctaagggattgcaacatggtattagtaatagaagcattcatatgatttggtatataaatat |
27804417 |
T |
|
| Q |
118 |
gtacataaccatcacgactacatggtctaatcgaattctaacttctcttattgaaaaggatcctgaaatattatttaccaaaacaggataaatgtatcat |
217 |
Q |
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| T |
27804418 |
gtacataagcatcacgactacatggtctaatcgaattctaacttctcttattgaaaaggatcctgaaatattatttaccaaaacaggataaatgtatcat |
27804517 |
T |
|
| Q |
218 |
ggttgtaatctatacagatatattgtggtatatgtcctttgaattgatgaacttgccatataactagttccaattcaattaataatgggattcaaatgta |
317 |
Q |
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| T |
27804518 |
ggttgtaatctatgcagatatattgtggtatatgtcctttgaattgatgaacttgccatataactagttccaattcaattaataatgggattcaaatgta |
27804617 |
T |
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| Q |
318 |
attatccttgaggaattggatcaacattttgaggcatatttaccaaccgttcatct |
373 |
Q |
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| T |
27804618 |
attacccttgaggaattggatcaacattttgaggcatatttatcaattgttcatct |
27804673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 3744550 - 3744432
Alignment:
| Q |
18 |
atattcatcatttcatgattactatcaaccatttgatgtctaagggattgcaacatggtattaataatagaagcattcacatgatttggtatataaatat |
117 |
Q |
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| T |
3744550 |
atattcatcgtttcatgattactaccatccatttgttgtcta-gggaatgcagaacgctcttagtaatagaaggattcatatgatttgccatatacttat |
3744452 |
T |
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| Q |
118 |
gtacataaccatcacgacta |
137 |
Q |
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| T |
3744451 |
gtacataaccatcatgacta |
3744432 |
T |
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