View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17439_low_16 (Length: 287)

Name: NF17439_low_16
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17439_low_16
NF17439_low_16
[»] chr2 (3 HSPs)
chr2 (85-200)||(3083038-3083153)
chr2 (91-200)||(38403833-38403939)
chr2 (17-80)||(17833577-17833643)
[»] scaffold0036 (1 HSPs)
scaffold0036 (91-200)||(99423-99529)
[»] chr1 (3 HSPs)
chr1 (85-176)||(40909811-40909902)
chr1 (125-200)||(33814017-33814092)
chr1 (125-200)||(33873487-33873562)
[»] chr4 (1 HSPs)
chr4 (57-89)||(50233471-50233503)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 3083153 - 3083038
Alignment:
Q  85 tatgtcaactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgcct 184  Q
    ||||| ||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | |||||    
T  3083153 tatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaaccagctgcct 3083054  T
Q  185 tacaaaccagaagcaa 200  Q
    ||||||||||||||||    
T  3083053 tacaaaccagaagcaa 3083038  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 38403939 - 38403833
Alignment:
Q  91 aactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaa 190  Q
    ||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||| |||||||||  ||||||| |||||||||||    
T  38403939 aactccaatggcagtctcctcattctcagcccctaaatgaataa---agcacaccaaaaattggacatcattgtaagtaataaacctgctgccttacaaa 38403843  T
Q  191 ccagaagcaa 200  Q
    ||||||||||    
T  38403842 ccagaagcaa 38403833  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 17833643 - 17833577
Alignment:
Q  17 cataggttcaaggacatgatatctacgaaatgacacatac---tacttatgattgtgtcattatcaa 80  Q
    |||||||||| ||  |||||||||| ||||||||||||||   ||||||||||||||| ||| ||||    
T  17833643 cataggttcagggtaatgatatctaagaaatgacacatactactacttatgattgtgtaattttcaa 17833577  T

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Target: scaffold0036 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 99529 - 99423
Alignment:
Q  91 aactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaa 190  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||  ||||||| |||||||||||    
T  99529 aactccaatggcagtctcctcattctcagcccctaaatgaataaagca---caccaaaaattggacatccttgtaagtaataaacctgctgccttacaaa 99433  T
Q  191 ccagaagcaa 200  Q
    ||||||||||    
T  99432 ccagaagcaa 99423  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 40909902 - 40909811
Alignment:
Q  85 tatgtcaactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacc 176  Q
    ||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  40909902 tatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaacc 40909811  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 33814092 - 33814017
Alignment:
Q  125 aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa 200  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||    
T  33814092 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa 33814017  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 33873562 - 33873487
Alignment:
Q  125 aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa 200  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||    
T  33873562 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa 33873487  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 50233471 - 50233503
Alignment:
Q  57 tacttatgattgtgtcattatcaaccattatgt 89  Q
    ||||||||||||||||||| |||||||||||||    
T  50233471 tacttatgattgtgtcattttcaaccattatgt 50233503  T

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