View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_low_20 (Length: 254)
Name: NF17439_low_20
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 19087381 - 19087161
Alignment:
| Q |
11 |
gagaagcaaagggagggagacctaatagaactactgcttgtggatattggaaggcaacaggttctcctggttatgtttattcttcagataacaaagttat |
110 |
Q |
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| T |
19087381 |
gagaagcaaggggagggagacctaatagaactactgcttgtggatactggaaggcaacaggttctcctggttatgtttattcttcagataacaaagttat |
19087282 |
T |
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| Q |
111 |
tggggtgaagaaaaccatggtgttctataaaggaaaagctccaagtggaaggaaaacaaaatggaagatgaatgaatacagagccattcaagtctctaac |
210 |
Q |
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| T |
19087281 |
tggggtgaagaaaaccatggttttctataaaggaaaagctccaagtggaaggaaaacaaaatggaagatgaatgaatacagagccattcaagtctctaac |
19087182 |
T |
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| Q |
211 |
caatccaacactgccacacct |
231 |
Q |
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| T |
19087181 |
caatccaacactgccacacct |
19087161 |
T |
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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 36452725 - 36452921
Alignment:
| Q |
22 |
ggagggagacctaatagaactactgcttgtggatattggaaggcaacaggttctcctggttatgtttattcttcagataacaaagttattggggtgaaga |
121 |
Q |
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| T |
36452725 |
ggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggttctcctagctacgtttactcttctaacaacaaagtcattggaataagga |
36452824 |
T |
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| Q |
122 |
aaaccatggtgttctataaaggaaaagctccaagtggaaggaaaacaaaatggaagatgaatgaatacagagccattcaagtctctaaccaatccaa |
218 |
Q |
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| T |
36452825 |
aaaccatggtgttttacataggaaaagctccatctggaaggaaaaccaaatggaagatgcatgaatataaagccattcaacaatctgaccaatccaa |
36452921 |
T |
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