View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_low_23 (Length: 221)
Name: NF17439_low_23
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27776875 - 27777094
Alignment:
| Q |
1 |
gtttgtttcatcttcttgttgaaggattgaattgtaacaattatcttgtgaacctttgtgtgtacgaacagtgtgtttaaggagatattttgaacggtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776875 |
gtttgtttcatcttcttgttgaaggattgaattgtaacaattatcttgtgaacctttgtgtgtacgaacagtgtgtttaaggagatattttgaacggtta |
27776974 |
T |
|
| Q |
101 |
gaatctgaagaaatgtttgagagtaaaattgctgcaccacctacgcgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaccatccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27776975 |
gaatctgaagaaatgtttgagagtaaaattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgctgtttcctaagtaccatccac |
27777074 |
T |
|
| Q |
201 |
tgttgatgttttctgtgctc |
220 |
Q |
| |
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| |||||||||||||||||| |
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| T |
27777075 |
tattgatgttttctgtgctc |
27777094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19672116 - 19672335
Alignment:
| Q |
1 |
gtttgtttcatcttcttgttgaaggattgaattgtaacaattatcttgtgaacctttgtgtgtacgaacagtgtgtttaaggagatattttgaacggtta |
100 |
Q |
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||||||||||||||||| ||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
19672116 |
gtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgcgaacctttgtgtgtacgaacagtgtgtttaaggtgatattttgaacggtga |
19672215 |
T |
|
| Q |
101 |
gaatctgaagaaatgtttgagagtaaaattgctgcaccacctacgcgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaccatccac |
200 |
Q |
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| T |
19672216 |
gaatcggtggaaatgtttgagagtaagatggctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaatatccac |
19672315 |
T |
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| Q |
201 |
tgttgatgttttctgtgctc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19672316 |
tgttgatgttttctgtgctc |
19672335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19743236 - 19743455
Alignment:
| Q |
1 |
gtttgtttcatcttcttgttgaaggattgaattgtaacaattatcttgtgaacctttgtgtgtacgaacagtgtgtttaaggagatattttgaacggtta |
100 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||| | | |
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| T |
19743236 |
gtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaagatgatactttgaacgttga |
19743335 |
T |
|
| Q |
101 |
gaatctgaagaaatgtttgagagtaaaattgctgcaccacctacgcgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaccatccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19743336 |
gaatctgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaatatccac |
19743435 |
T |
|
| Q |
201 |
tgttgatgttttctgtgctc |
220 |
Q |
| |
|
||||| |||||||||||||| |
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| T |
19743436 |
tgttggtgttttctgtgctc |
19743455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19796852 - 19796633
Alignment:
| Q |
1 |
gtttgtttcatcttcttgttgaaggattgaattgtaacaattatcttgtgaacctttgtgtgtacgaacagtgtgtttaaggagatattttgaacggtta |
100 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||| | | |
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|
| T |
19796852 |
gtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaagatgatactttgaacgttga |
19796753 |
T |
|
| Q |
101 |
gaatctgaagaaatgtttgagagtaaaattgctgcaccacctacgcgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaccatccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19796752 |
gaatctgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaatatccac |
19796653 |
T |
|
| Q |
201 |
tgttgatgttttctgtgctc |
220 |
Q |
| |
|
||||| |||||||||||||| |
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| T |
19796652 |
tgttggtgttttctgtgctc |
19796633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19540192 - 19540411
Alignment:
| Q |
1 |
gtttgtttcatcttcttgttgaaggattgaattgtaacaattatcttgtgaacctttgtgtgtacgaacagtgtgtttaaggagatattttgaacggtta |
100 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |
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| T |
19540192 |
gtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgtgaacctttgtgtgtaggaacagtgtgtttaaggtgatattttgaacggtga |
19540291 |
T |
|
| Q |
101 |
gaatctgaagaaatgtttgagagtaaaattgctgcaccacctacgcgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaccatccac |
200 |
Q |
| |
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||||| | ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19540292 |
gaatcagtggaaatgtttgagagtaagatggctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagtaatatccac |
19540391 |
T |
|
| Q |
201 |
tgttgatgttttctgtgctc |
220 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
19540392 |
tgttgatgttttctatgctc |
19540411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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