View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_low_25 (Length: 202)
Name: NF17439_low_25
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 43612914 - 43613089
Alignment:
| Q |
14 |
catcaactgatcaaacaagaaaccagtaataaaattatatg-aagtacagacacatgcacgatataacactaacacatgttagacattaaacgcactttc |
112 |
Q |
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| T |
43612914 |
catcaactgatcaaacaagaaatcagtaataaaattatatgtaagtacagacacatacacgatatgacactgacacatgttagacattagacgcactttc |
43613013 |
T |
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| Q |
113 |
atttgaagtgttgatgctacatcggtaaaattatattttaagttgaaaacacagatcctagaattatgctacatct |
188 |
Q |
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| T |
43613014 |
atttgaagtgttgatgctacatccgtaaaattatattttaagttgaaaacacagatcctagagttatgctacatct |
43613089 |
T |
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