View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_low_3 (Length: 578)
Name: NF17439_low_3
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Complemental strand, 52585174 - 52584618
Alignment:
| Q |
16 |
gttttgacaccatatcccaagtggtcataaatttaagtatgattttggcatgtgcagtgtatagtaatagtactcctccaagttagttt-gagctatcac |
114 |
Q |
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| T |
52585174 |
gttttgacaccatatcccaagtggtcataaatttaagtatgattttggcatgtgcagtgtatagtaatagtactcctccaagttagttttgagctatcac |
52585075 |
T |
|
| Q |
115 |
atttatcttactgaatactagagctgcaatattcaaacatgaaacttgggatttgattgtgaccactgattatgctcaccaatgaatccactgctcaacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52585074 |
atttatcttactgaatactagagctgcaatattcaaacatgaaacttgggatttgattgtgaccactgattatgctcaccaatgaatccactgctcaacc |
52584975 |
T |
|
| Q |
215 |
tcaatagggcttcgtgcacctagtacggattcaccacttctatgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctc |
314 |
Q |
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| T |
52584974 |
tcaatagggcttcgtgcacctagtacggattcaccacttctatgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctc |
52584875 |
T |
|
| Q |
315 |
aaatagtttcttcagtacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactccttttctctttttccataaaaatctctcttctttc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52584874 |
aaatagtttcttcagtacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactccttttctccttttccataaaaatctctcttctttc |
52584775 |
T |
|
| Q |
415 |
actgttctagagagatccacatcacaaaactcacatgcttca-ttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584774 |
actgttctagagagatccacatcacaaaactcacatgcttcatttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagt |
52584675 |
T |
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| Q |
514 |
ttattttttcaatcactttctctcagacnnnnnnngctagctacaattgatgatgtc |
570 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
52584674 |
ttatttattcaatcactttctctcagacaaaaaaagctagctacaattaatgatgtc |
52584618 |
T |
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