View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_low_4 (Length: 510)
Name: NF17439_low_4
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 4775040 - 4775516
Alignment:
| Q |
13 |
agcataggtgtacgaaaccaacccatcaagattacagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcaccaagaccctcctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4775040 |
agcataggtgtacgaaaccaacccatcaagattagagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcactaagaccctcctt |
4775139 |
T |
|
| Q |
113 |
ttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggag |
212 |
Q |
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||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775140 |
ttaaataaattgtctctagcaggaacatgattcaaactcaaacgtaaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggag |
4775239 |
T |
|
| Q |
213 |
tagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagccac |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775240 |
tagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagccac |
4775339 |
T |
|
| Q |
313 |
ctgcaatgt---------atacgttctgttatattcaagtcaatagaa---aatgttaacatttgtgtggccatatatacatataatacaatgatgaatt |
400 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775340 |
ctgcgatgtataggataaatacgttctgttatattcaagtcaatagaaaataatgttaacatttgtgtggccatatatacatataatacaatgatgaatt |
4775439 |
T |
|
| Q |
401 |
atgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgatttccatttacagatattattacaaccattattct |
492 |
Q |
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| T |
4775440 |
atgctaaaatcatggaacagtcaacta---------------tactatgggatatgatttccatttacagatattattacaaccattattct |
4775516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 303
Target Start/End: Original strand, 29552984 - 29553195
Alignment:
| Q |
101 |
aagaccctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaa |
200 |
Q |
| |
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||||||||||||||| ||||||||| | || ||||| | |||||| || |||||| ||||||||||| |||||||||||| | || | ||||||||||| |
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| T |
29552984 |
aagaccctccttttaaataaattgtttttagtaggaatacgattcagacccaatcgccaagcaaaaatagagactttgagaggaaccattttaagccaaa |
29553083 |
T |
|
| Q |
201 |
gaac---------atgaggagtagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaat |
291 |
Q |
| |
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|||| |||||||| |||||||| || ||| | | ||||||| | |||||| ||||| ||||||| ||||| | | ||||||||||||| |
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| T |
29553084 |
gaacctgagaattctgaggagtggagttctgcaaaccctccatcaatttattatacgcattgctaactgtgtaactctgagaagagtgtaaatgccaaat |
29553183 |
T |
|
| Q |
292 |
ccatctatcctc |
303 |
Q |
| |
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|||||||||||| |
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| T |
29553184 |
ccatctatcctc |
29553195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 359 - 486
Target Start/End: Original strand, 448506 - 448633
Alignment:
| Q |
359 |
acatttgtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgat |
458 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
448506 |
acatttgtgtagccatatatacatggaatacaatgatgaatattgctcaaatcatggaacagtcaactatactaattggctagttactataagatatgat |
448605 |
T |
|
| Q |
459 |
ttccatttacagatattattacaaccat |
486 |
Q |
| |
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|||||||||| |||||||||||| |||| |
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|
| T |
448606 |
ttccatttactgatattattacacccat |
448633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 38397807 - 38397707
Alignment:
| Q |
104 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
203 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || ||||| |||||||| ||||||||| || |||||||||||||||| |
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| T |
38397807 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcgaaaattgatactttgagagaaaccactttaagccaaagaa |
38397708 |
T |
|
| Q |
204 |
c |
204 |
Q |
| |
|
| |
|
|
| T |
38397707 |
c |
38397707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 17173714 - 17173614
Alignment:
| Q |
104 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
203 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || |||||||| ||||| ||||||||| | || |||||||||||||||| |
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| T |
17173714 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcaaatattgatactttgagatgaaccactttaagccaaagaa |
17173615 |
T |
|
| Q |
204 |
c |
204 |
Q |
| |
|
| |
|
|
| T |
17173614 |
c |
17173614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 43060749 - 43060807
Alignment:
| Q |
327 |
ttctgttatattcaagtcaatagaaaatgttaacatttgtgtggccatatatacatata |
385 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
43060749 |
ttctgttgtattcaagtcaatagaaaatattaacatttgtgtggtaatatatatatata |
43060807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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