View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17439_low_5 (Length: 483)
Name: NF17439_low_5
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 27776874 - 27776418
Alignment:
| Q |
13 |
aaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacctttac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776874 |
aaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacctttac |
27776775 |
T |
|
| Q |
113 |
tagaacaattaaaatatgctacaacttttgtagctaaaaagtattttaattccaaaattagggtttatacacctgattttaagctatgttttgagcattt |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776774 |
tagaacaattaaaatatgctgcaacttttgtagctaaaaagtattttaattccaaaattagggtttatacacctgattttaagctatgttttgagcattt |
27776675 |
T |
|
| Q |
213 |
ttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttataga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776674 |
ttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttataga |
27776575 |
T |
|
| Q |
313 |
tatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776574 |
tatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttg |
27776475 |
T |
|
| Q |
413 |
ggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctg |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776474 |
ggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctg |
27776418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 468
Target Start/End: Original strand, 10279956 - 10280138
Alignment:
| Q |
286 |
gagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaag |
385 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || ||| |||||||||||||||| ||| ||||||||||||||||||| || | | || | |
|
|
| T |
10279956 |
gagccttcaagaatgacactatatagatatggtaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
10280055 |
T |
|
| Q |
386 |
gtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcct |
468 |
Q |
| |
|
| ||| |||||||||||| || ||||| ||||||||||| ||| ||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
10280056 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcct |
10280138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 19743235 - 19742781
Alignment:
| Q |
13 |
aaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacctttac |
112 |
Q |
| |
|
|||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
19743235 |
aaaatcacaggagtatcactttcaaaagaactaatgagttcggctggttttgcacttaaagccaacatcacaacacttggaaaatatgttctacctttac |
19743136 |
T |
|
| Q |
113 |
tagaacaattaaaatatgctacaacttttgtagctaaaaagtattttaattccaaaattagggtttatacacctgattttaagctatgttttgagcattt |
212 |
Q |
| |
|
|||||||||| || | || | |||||||||| | |||||| || |||||| |||| | | | |||||||||||||||||||| | |||||||| || || |
|
|
| T |
19743135 |
tagaacaattcaagtttgtttcaacttttgttgttaaaaaatactttaataacaaagtcaagatttatacacctgattttaagttgtgttttgaccactt |
19743036 |
T |
|
| Q |
213 |
ttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttataga |
312 |
Q |
| |
|
|||| ||||||| |||||||||| |||| |||||||| ||||||||||| || |||||||||| ||| | |||||||||| ||||||||||||||| |
|
|
| T |
19743035 |
ttgtgttcatacgggtggaaaagcggttcttgatgagattcaaaaagtgctggggttaagtgattttcaattagagccttcaaagatgacactttataga |
19742936 |
T |
|
| Q |
313 |
tatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttg |
412 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19742935 |
tatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgataggatttggcaaattgcatttg |
19742836 |
T |
|
| Q |
413 |
ggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcc |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19742835 |
ggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19742781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 19796853 - 19797307
Alignment:
| Q |
13 |
aaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacctttac |
112 |
Q |
| |
|
|||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
19796853 |
aaaatcacaggagtatcactttcaaaagaactaatgagttcggctggttttgcacttaaagccaacatcacaacacttggaaaatatgttctacctttac |
19796952 |
T |
|
| Q |
113 |
tagaacaattaaaatatgctacaacttttgtagctaaaaagtattttaattccaaaattagggtttatacacctgattttaagctatgttttgagcattt |
212 |
Q |
| |
|
|||||||||| || | || | |||||||||| | |||||| || |||||| |||| | | | |||||||||||||||||||| | |||||||| || || |
|
|
| T |
19796953 |
tagaacaattcaagtttgtttcaacttttgttgttaaaaaatactttaataacaaagtcaagatttatacacctgattttaagttgtgttttgaccactt |
19797052 |
T |
|
| Q |
213 |
ttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttataga |
312 |
Q |
| |
|
|||| ||||||| |||||||||| |||| |||||||| ||||||||||| || |||||||||| ||| | |||||||||| ||||||||||||||| |
|
|
| T |
19797053 |
ttgtgttcatacgggtggaaaagcggttcttgatgagattcaaaaagtgctggggttaagtgattttcaattagagccttcaaagatgacactttataga |
19797152 |
T |
|
| Q |
313 |
tatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttg |
412 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19797153 |
tatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgataggatttggcaaattgcatttg |
19797252 |
T |
|
| Q |
413 |
ggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcc |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19797253 |
ggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19797307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 19540191 - 19539738
Alignment:
| Q |
13 |
aaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacctttac |
112 |
Q |
| |
|
|||||||||||| | ||||| |||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
19540191 |
aaaatcacaggagtatcactttcaaaagc-ctaatgagttcggctggtattgcacttaaagccaacatcacaacacttggaaaatatgttctgcctttac |
19540093 |
T |
|
| Q |
113 |
tagaacaattaaaatatgctacaacttttgtagctaaaaagtattttaattccaaaattagggtttatacacctgattttaagctatgttttgagcattt |
212 |
Q |
| |
|
|||||||||| || | || | |||||||||| | |||||| || ||||| |||| | | | |||||||||||||||||||| | |||||||| || || |
|
|
| T |
19540092 |
tagaacaattcaagtttgtttcaacttttgttgttaaaaaatactttaacaacaaagtgaagatttatacacctgattttaagttgtgttttgaccactt |
19539993 |
T |
|
| Q |
213 |
ttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttataga |
312 |
Q |
| |
|
|||| ||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| | |||||||||| ||||||||||||||| |
|
|
| T |
19539992 |
ttgtgttcatacgggtggaaaagcggttcttgatgagatacaaaaagtgctaggattaagtgattttcaattagagccttcaaagatgacactttataga |
19539893 |
T |
|
| Q |
313 |
tatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttg |
412 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19539892 |
tatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgataggatttggcaaattgcatttg |
19539793 |
T |
|
| Q |
413 |
ggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcc |
467 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
19539792 |
ggtctagatttaagtgtaacactgctgtttggtgtgcattaaagaatgttgatcc |
19539738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 19672115 - 19671661
Alignment:
| Q |
13 |
aaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacctttac |
112 |
Q |
| |
|
|||||||||||| | ||||| |||||| | ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
19672115 |
aaaatcacaggagtatcactttcaaaagacctaatgagttcagctggttttgcccttaaagccaacatcccaacacttggaaaatttgttttaccattac |
19672016 |
T |
|
| Q |
113 |
tagaacaattaaaatatgctacaacttttgtagctaaaaagtattttaattccaaaattagggtttatacacctgattttaagctatgttttgagcattt |
212 |
Q |
| |
|
||||||||| ||||||| | |||||||| | | | |||||| |||| |||| | | | |||||||||||||||||||| | |||||||| || || |
|
|
| T |
19672015 |
cagaacaattcaaatatgtttcaacttttattgtcagaaagtacattaacaacaaagtgatgatttatacacctgattttaagttgtgttttgaccactt |
19671916 |
T |
|
| Q |
213 |
ttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttataga |
312 |
Q |
| |
|
|||| ||||||| |||||||||| |||| |||||||||||||||||||| || |||||||||| ||| | |||||||||| ||||||||||||||| |
|
|
| T |
19671915 |
ttgtgttcatacgggtggaaaagcggttcttgatgagatacaaaaagtgctagggttaagtgattttcaattagagccttcaaagatgacactttataga |
19671816 |
T |
|
| Q |
313 |
tatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttg |
412 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||| |||||||||||||| ||||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
19671815 |
tatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagagtatgaaaaggtgataggatttggcaaattgcatttg |
19671716 |
T |
|
| Q |
413 |
ggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcc |
467 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
19671715 |
ggtctggatttaagtgtaacactcctgtttggtgtgcattaaggaatgttgatcc |
19671661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 26453320 - 26453373
Alignment:
| Q |
177 |
ttatacacctgattttaagctatgttttgagcatttttgtattcatactggtgg |
230 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
26453320 |
ttatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtgg |
26453373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 184 - 467
Target Start/End: Original strand, 34053144 - 34053427
Alignment:
| Q |
184 |
cctgattttaagctatgttttgagcatttttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaa |
283 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| ||||||||| || |||| ||||| || | ||| |||| | ||||||||||| | |
|
|
| T |
34053144 |
cctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcata |
34053243 |
T |
|
| Q |
284 |
ttgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaa |
383 |
Q |
| |
|
| || || |||||||||||||| |||||| ||| |||||||| |||||||| | ||||||| ||||||||| ||||||||| || ||||| || || |
|
|
| T |
34053244 |
tggaaccatcaagaatgacactaaatagatttggtaatacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaa |
34053343 |
T |
|
| Q |
384 |
aggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcc |
467 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| || |||| |||||||| |
|
|
| T |
34053344 |
aggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatcc |
34053427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 444
Target Start/End: Original strand, 15239445 - 15239705
Alignment:
| Q |
184 |
cctgattttaagctatgttttgagcatttttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaa |
283 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| ||||||||| || |||| |||||| | | ||| |||| |||||||||||||| | |
|
|
| T |
15239445 |
cctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcata |
15239544 |
T |
|
| Q |
284 |
ttgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaa |
383 |
Q |
| |
|
| || || ||||| |||||||| |||||| ||| || ||||| |||||||| | ||||||| ||||||||| ||||||||| || ||||| | || |
|
|
| T |
15239545 |
tggaaccatcaaggatgacactgaatagatttggtaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaagggaggattaaaaa |
15239644 |
T |
|
| Q |
384 |
aggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttgg |
444 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| ||||| ||||| | |||||||||| |
|
|
| T |
15239645 |
aggtgatagaacttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttgg |
15239705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 422
Target Start/End: Complemental strand, 23499244 - 23499099
Alignment:
| Q |
277 |
tggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaagga |
376 |
Q |
| |
|
||||| || ||||| |||||||||||||||||| | | |||||| || || || ||||| ||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
23499244 |
tggcatatggagccgtcaagaatgacactttatcgttttggaaacacctcgagcagttcgctttggtacgaattggcttacacggaagccaagggaagga |
23499145 |
T |
|
| Q |
377 |
taaggaaaggtgataggatttggcaaattgcatttgggtctggatt |
422 |
Q |
| |
|
| | |||||| ||||| | |||||||| |||||||| || ||||| |
|
|
| T |
23499144 |
tcaagaaaggagatagaacatggcaaatagcatttggttcaggatt |
23499099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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