View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17439_low_6 (Length: 471)
Name: NF17439_low_6
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 3203204 - 3202759
Alignment:
| Q |
19 |
aactcacactccaagcttcttggggttgcaacagaatcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacagga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3203204 |
aactcacactccaagcttcttggggttgcaacagaatcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacagga |
3203105 |
T |
|
| Q |
119 |
ataaccctctcacatccttccttttccgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3203104 |
ataaccctctcacatccttccttttccgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaaca |
3203005 |
T |
|
| Q |
219 |
agaagatcattggagcaaggaacatcgtaaattcatcccttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3203004 |
agaagatcattggagcaaggaacatcgtaaattcatcccttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgt |
3202905 |
T |
|
| Q |
319 |
aaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3202904 |
gaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgt |
3202805 |
T |
|
| Q |
419 |
gctgaaagtgtcatattagctggaatggatgttgctgttgatgatg |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3202804 |
gctgaaagtgtcatattagctggaatggatgttgctgttgatgatg |
3202759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 3209178 - 3208733
Alignment:
| Q |
19 |
aactcacactccaagcttcttggggttgcaacagaatcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacagga |
118 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3209178 |
aactcacacttcaagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacagga |
3209079 |
T |
|
| Q |
119 |
ataaccctctcacatccttccttttccgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3209078 |
ataaccctctcacatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaaca |
3208979 |
T |
|
| Q |
219 |
agaagatcattggagcaaggaacatcgtaaattcatcccttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgt |
318 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3208978 |
agaagatcattggagcaaggacctttgtaaattcatcccttccatacgatgatgttggccatggaactcacacagccagcacggccgctggaaggcccgt |
3208879 |
T |
|
| Q |
319 |
aaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgt |
418 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |
|
|
| T |
3208878 |
gcaaggtgctaatgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgt |
3208779 |
T |
|
| Q |
419 |
gctgaaagtgtcatattagctggaatggatgttgctgttgatgatg |
464 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3208778 |
actgaaagttcaatattagctggaatggatgctgcagttgatgatg |
3208733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 3217126 - 3216677
Alignment:
| Q |
19 |
aactcacactccaagcttcttggggttgcaacagaatcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacagga |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3217126 |
aactcacacaccaagcttcttggggttgcaacagagtcaaggattatggataaattccaatctcggtaaagggatcataattggaatcctggacacagga |
3217027 |
T |
|
| Q |
119 |
ataaccctctcacatccttccttttccgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaaca |
218 |
Q |
| |
|
||| ||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
3217026 |
atatccctctcccatccttccttttctgacgagggaatgccctctccacctgcaaaatggaatggccactgtgaattcacaggggaaaggatttgtaaca |
3216927 |
T |
|
| Q |
219 |
agaagatcattggagcaaggaacatcgt---------aaattcatcccttccatacgattatgttggccacggaactcacacggccagcacggccgctgg |
309 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3216926 |
agaagctcattggagcaaggaacttcgtcacagacacaaatttatctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctgg |
3216827 |
T |
|
| Q |
310 |
aaggcccgtaaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtc |
409 |
Q |
| |
|
||||| ||| | || || |||||||| || || || || ||||| |||| |||||||||||| |||||||||||||||| |||||||||||| || | |
|
|
| T |
3216826 |
aaggcttgtacagggggccaatgtcttcggcaacgctaaaggtacggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagc |
3216727 |
T |
|
| Q |
410 |
tttggttgtgctgaaagtgtcatattagctggaatggatgttgctgttga |
459 |
Q |
| |
|
||||||| |||| |||| | |||||| |||||||||| ||| ||||| |
|
|
| T |
3216726 |
agtggttgtcctgagagtgcaacattagcaggaatggatgctgcagttga |
3216677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 3232140 - 3232106
Alignment:
| Q |
164 |
ccacctgcaaaatggaatggccattgtgaattcac |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3232140 |
ccacctgcaaaatggaaaggccattgtgaattcac |
3232106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 3177901 - 3177934
Alignment:
| Q |
164 |
ccacctgcaaaatggaatggccattgtgaattca |
197 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
3177901 |
ccacctgcaaaatggaaaggccattgtgaattca |
3177934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 3221926 - 3221873
Alignment:
| Q |
145 |
cgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcac |
198 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3221926 |
cgatgaaggaatgccgccaccacctgcaaaatggaaaggccattgcgaattcac |
3221873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 3240939 - 3240906
Alignment:
| Q |
164 |
ccacctgcaaaatggaatggccattgtgaattca |
197 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
3240939 |
ccacctgcaaaatggaaaggccattgtgaattca |
3240906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University