View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_low_8 (Length: 430)
Name: NF17439_low_8
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 13859175 - 13858767
Alignment:
| Q |
14 |
atatatctatgtaaccttagcaaaaatagatgctacattacacacagagttcaatagttcagaaatttggtttaccagcacgtatcaaatgcttttgtct |
113 |
Q |
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| T |
13859175 |
atatatctatgtagccttagcaaaaatagatgctacattacacacagagttcaatagttcagatgtttgatttaccagcacgtatcaaatgcttttgtct |
13859076 |
T |
|
| Q |
114 |
caaacatcatatcaaatctcaatccaatggacaattgagagacaaataaagcattgttgtattttgaaagtgggacaacaaattctgacacgcatgctct |
213 |
Q |
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| T |
13859075 |
caaacatcatatcaaatctcaatccaatggacaattgagagacaaataaagcattgttgtattttgaaagtggaacaacaaattctgacacgcatgctct |
13858976 |
T |
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| Q |
214 |
gcaaatgagaagaaacagacattacactcaagaaaagtatatcctaatccaaaagtttgtatttgttatactataaattaaccttggttaggcaaggctt |
313 |
Q |
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| T |
13858975 |
gcaaatgagcagaaacaaacattacactcaagaaaagtatatcctaatccaaaagtttgtatttgttatactataaattaaccttggttaggcaaggctt |
13858876 |
T |
|
| Q |
314 |
agagcaaattaaatataccttggatagtatacaacaggcaacagagttcgattagcagcaacaacaagcgcatcaatgggcatattattagtagaaagga |
413 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13858875 |
agagcaaattaaatataccctggatagtatacaacaggcaacagagttcgattagcagcaacaacaagcgcatcaatgggcatattattagcagaaagga |
13858776 |
T |
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| Q |
414 |
ctgatgatg |
422 |
Q |
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| T |
13858775 |
ctgatgatg |
13858767 |
T |
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