View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17439_low_9 (Length: 396)
Name: NF17439_low_9
Description: NF17439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17439_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 66 - 378
Target Start/End: Complemental strand, 29811134 - 29810817
Alignment:
| Q |
66 |
cttggtacatcatcattaatataatggaaa-gtatgaaacaaccaaccatatattgcccattctcttacgaataccgcattcttgcta--aagccacttg |
162 |
Q |
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| T |
29811134 |
cttggtacatcatcattaatataatggaaaagtatgaaacaaccagccatgtattgcccattctcttacgaataccgcattcttgctataaagccacttg |
29811035 |
T |
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| Q |
163 |
tgaaagcatatatgctcttatttttgtggaaggacttccatgttcctcgttcatcactagtcatcatcatttactatacgactacaaatcttcaatgcac |
262 |
Q |
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| T |
29811034 |
tgaa-gcataaatgctcttatttttgtggaaggacttccatgttcctcgttcatcactagtcatcatcatttactatacgactacaaatcttcaatgcac |
29810936 |
T |
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| Q |
263 |
atattgaaggcaatcccgatttttcacgagc-----atgcaacacactgagattaatttccatgtggttcgtgacgaaatatacaacaagacgtacatta |
357 |
Q |
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| T |
29810935 |
atattgaaggcaatcccgatttttcatgagcatgcaatgcaacacactgagattaatttccatgtggttcgtgacgaa--atacaacaagacgtacatta |
29810838 |
T |
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| Q |
358 |
tacatcttcaatggtatttgt |
378 |
Q |
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| T |
29810837 |
tacatcttcaatggtatttgt |
29810817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 29811186 - 29811151
Alignment:
| Q |
15 |
cataggtaagctgtgatactagaaggtcaactagtg |
50 |
Q |
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| T |
29811186 |
cataggtaagctgtgatactagaaggtcaactagtg |
29811151 |
T |
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