View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743_high_2 (Length: 535)

Name: NF1743_high_2
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743_high_2
NF1743_high_2
[»] chr1 (9 HSPs)
chr1 (17-524)||(50182582-50183090)
chr1 (259-406)||(39501112-39501259)
chr1 (249-404)||(33978131-33978286)
chr1 (265-362)||(28037638-28037735)
chr1 (343-414)||(12458725-12458796)
chr1 (266-362)||(14650987-14651080)
chr1 (266-362)||(14660778-14660871)
chr1 (312-368)||(7386704-7386760)
chr1 (241-281)||(27466779-27466819)
[»] chr3 (6 HSPs)
chr3 (24-416)||(31574601-31574993)
chr3 (45-406)||(2497054-2497411)
chr3 (241-415)||(4741528-4741702)
chr3 (265-362)||(54548318-54548415)
chr3 (265-362)||(52964141-52964238)
chr3 (312-368)||(29210843-29210899)
[»] chr2 (6 HSPs)
chr2 (39-414)||(14785776-14786148)
chr2 (260-420)||(10748038-10748198)
chr2 (267-369)||(36756940-36757042)
chr2 (241-406)||(37670656-37670821)
chr2 (45-144)||(10747815-10747914)
chr2 (264-367)||(16468348-16468451)
[»] chr7 (6 HSPs)
chr7 (42-406)||(12350683-12351047)
chr7 (40-406)||(41147522-41147888)
chr7 (241-420)||(30305265-30305444)
chr7 (249-403)||(513829-513983)
chr7 (258-368)||(43970028-43970138)
chr7 (265-368)||(41605361-41605464)
[»] chr5 (7 HSPs)
chr5 (40-406)||(23151037-23151403)
chr5 (212-406)||(28499116-28499310)
chr5 (258-367)||(13020906-13021015)
chr5 (258-367)||(13092430-13092539)
chr5 (352-420)||(34893753-34893821)
chr5 (265-362)||(10813136-10813233)
chr5 (264-420)||(7274525-7274681)
[»] chr4 (7 HSPs)
chr4 (40-406)||(32499314-32499680)
chr4 (260-420)||(42327835-42327995)
chr4 (222-420)||(1480981-1481177)
chr4 (268-406)||(54421356-54421494)
chr4 (45-144)||(42328111-42328210)
chr4 (111-147)||(2262648-2262684)
chr4 (312-412)||(43733950-43734050)
[»] scaffold0067 (1 HSPs)
scaffold0067 (45-406)||(10931-11292)
[»] chr8 (8 HSPs)
chr8 (259-420)||(34752622-34752783)
chr8 (260-420)||(9180663-9180823)
chr8 (259-416)||(11629487-11629644)
chr8 (45-143)||(34752899-34752997)
chr8 (45-144)||(9180939-9181038)
chr8 (90-187)||(7593613-7593712)
chr8 (51-144)||(11629279-11629372)
chr8 (312-416)||(10394672-10394776)
[»] chr6 (3 HSPs)
chr6 (260-420)||(10158887-10159047)
chr6 (45-144)||(10159163-10159262)
chr6 (343-414)||(16863312-16863383)
[»] scaffold0996 (1 HSPs)
scaffold0996 (249-405)||(1496-1652)
[»] scaffold0007 (1 HSPs)
scaffold0007 (241-336)||(188397-188492)
[»] scaffold0687 (1 HSPs)
scaffold0687 (90-187)||(2961-3060)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 524
Target Start/End: Original strand, 50182582 - 50183090
Alignment:
Q  17 ctttcgtgactttaagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50182582 ctttcgtgactttaagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgct 50182681  T
Q  117 attaaagtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatg 216  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||    
T  50182682 attaaagtggctatttcaaatgggatgcatgttgtactatttgaaacagattcaaaaattctgtctgatgccatcaactctaattttactccaagcaatg 50182781  T
Q  217 aatttggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatag 316  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||    
T  50182782 aatttggtgatcttgtaatccaatgtaaaagtctcttactcgatagacccgactttgtagtgccgtatattaagaggcaagcaaatggtgttgcccatag 50182881  T
Q  317 tattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgc 416  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50182882 tattgctagggcatcactatctaatcctag-ccccatatttttcatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgc 50182980  T
Q  417 cttttgct---nnnnnnnngctctccaaattcatttagataaaattttccggattttcaataagatatgctctccaaattcatcgtatgcttaaaccttt 513  Q
    | ||||||           |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  50182981 c-tttgctaaaaaaaaaaagctctccaaattcatttagataaaattttctgtattttcaataagataagctctccaaattcatcgtatgcttaaactttt 50183079  T
Q  514 gtgcacttcat 524  Q
    |||||||||||    
T  50183080 gtgcacttcat 50183090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 259 - 406
Target Start/End: Original strand, 39501112 - 39501259
Alignment:
Q  259 atagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatatttt 358  Q
    |||||||||||||||||||||||||  |||||||| |||||||| | |||||  ||||||||||||| |||||||||||| | ||||||| |||||| ||    
T  39501112 atagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagcatcactatctcaccctagcctccatatctt 39501211  T
Q  359 ttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    | |||||||||  |||||||||||| | ||| |||| |||||||||||    
T  39501212 tcatcatgtaacacctactttgtatccgttagtttttaatgaaatgaa 39501259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 404
Target Start/End: Complemental strand, 33978286 - 33978131
Alignment:
Q  249 ctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcc 348  Q
    ||||| ||| || ||||||||||||||||||| ||  || ||||| |||| ||| | ||||| |||||||||||||| || ||  ||| | |||||||||    
T  33978286 ctcttgctcaattgacccgactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcc 33978187  T
Q  349 cccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatg 404  Q
    ||||||||||| ||  ||||    |||||||||| ||||||||| |||||||||||    
T  33978186 cccatatttttaatgttgtaccttctactttgtactccttaattatgaatgaaatg 33978131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 362
Target Start/End: Original strand, 28037638 - 28037735
Alignment:
Q  265 ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat 362  Q
    ||||||||  ||||||||| ||||||||| |||  ||| | ||||| |||||||| ||||| || ||  ||||| |||||||||||||| ||||||||    
T  28037638 ccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccccatcttttttat 28037735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 12458796 - 12458725
Alignment:
Q  343 ctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaacttt 414  Q
    |||||||||||||||| ||| |||||  || |||||||||||| || ||| ||||||||||| | |||||||    
T  12458796 ctagcccccatattttctataatgtaccgcttactttgtattctttgattatgaatgaaatgcattaacttt 12458725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 14650987 - 14651080
Alignment:
Q  266 cgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat 362  Q
    |||||||||||||||||  ||| ||||| ||||||||   ||||| ||||| || ||||| ||||   ||||| |||||||||||||||| ||||||    
T  14650987 cgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14651080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 14660778 - 14660871
Alignment:
Q  266 cgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat 362  Q
    |||||||||||||||||  ||| ||||| ||||||||   ||||| ||||| || ||||| ||||   ||||| |||||||||||||||| ||||||    
T  14660778 cgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14660871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 7386704 - 7386760
Alignment:
Q  312 catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgta 368  Q
    ||||| |||||||| || ||  |||||||||||||||||||| |||||||| |||||    
T  7386704 catagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgta 7386760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 27466779 - 27466819
Alignment:
Q  241 gtagaagtctcttactcgatagacccgactttgtagtgtcg 281  Q
    ||||||||||||||||  ||| |||||||||||||||||||    
T  27466779 gtagaagtctcttacttaataaacccgactttgtagtgtcg 27466819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 416
Target Start/End: Original strand, 31574601 - 31574993
Alignment:
Q  24 gactttaagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaa- 122  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||||||     
T  31574601 gactttacgggaactcttttgcttggaaaatcagacttttaccactcatcaaccacaatcttggagggcgagtctctaggtttacttgatactattaaaa 31574700  T
Q  123 gtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttg 222  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| ||| || ||| |||||||||||||||||||||||||| || ||||| |||||    
T  31574701 gtggctatttcaaatgggatgcatgttgtactatttgaaatagattctaaaattctgtttgatgccatcaactctaattttactccaa-caatgcatttg 31574799  T
Q  223 gtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgc 322  Q
    ||||| |||||||| || ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||| |||||||||||| | |||||||||    
T  31574800 gtgattttgtaatccaatgtagaagtctcttactcgatagatccgactttgcagtgtcgtatattaggaggcaagtaaatggtgttgctcgtagtattgc 31574899  T
Q  323 tagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgc 416  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31574900 tagggcatcactatctaatcctagccgccatatttttcatcatgtaatgcctacttagtattccttaattttgaatgaaatgaagtaactttgc 31574993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 45 - 406
Target Start/End: Complemental strand, 2497411 - 2497054
Alignment:
Q  45 cttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgc 144  Q
    ||||| |||||||||||||| ||||||||||||||  | |||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  2497411 cttgggaaatcagacttttatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaagtggctatttcaaatgagatgc 2497312  T
Q  145 atgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtag 244  Q
    ||| |||| |||||||||| ||||| ||  | ||  |||||||  ||| |  ||| | | | |  | |||||| ||||| |||||||||| | || ||||    
T  2497311 atgttgtattatttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtag 2497212  T
Q  245 aagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcct 344  Q
    |||||||||||| |||| ||||||||||| |||||||||  ||    || |||||||| ||||||| |||||||||||| | || || |||||| |||||    
T  2497211 aagtctcttacttgataaacccgactttgcagtgtcgtatgtt----ggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcct 2497116  T
Q  345 agcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    ||||||||||||||| |||||||| |||||||||||||   ||||||| |||||||||||||    
T  2497115 agcccccatatttttcatcatgtattgcctactttgtaccgcttaattatgaatgaaatgaa 2497054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 415
Target Start/End: Complemental strand, 4741702 - 4741528
Alignment:
Q  241 gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaa 340  Q
    ||||||||||||||||   ||||  | ||||||| ||||||||  |||||||| | || |||   ||||| |||||||||||||| |||||  |||| ||    
T  4741702 gtagaagtctcttactttctagaaactactttgttgtgtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagcatctttatccaa 4741603  T
Q  341 tcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttg 415  Q
     ||||||||||||||||||| | |||||  | ||||||| || |  |||||| ||||||||||||| ||||||||    
T  4741602 ccctagcccccatattttttgtgatgtaccgactactttatactttttaattatgaatgaaatgaattaactttg 4741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 54548415 - 54548318
Alignment:
Q  265 ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat 362  Q
    ||||||||  ||||||||| ||||||||| |||  ||| | ||||| |||||||| ||||| || ||  ||||| |||||||||||||| ||||||||    
T  54548415 ccgactttaaagtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttat 54548318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 52964238 - 52964141
Alignment:
Q  265 ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat 362  Q
    ||||||||  ||||||||| ||||||||| |||  ||| | ||||| |||||||| |||||  | ||  ||||| |||||||||||||| ||||||||    
T  52964238 ccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccccatcttttttat 52964141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 29210899 - 29210843
Alignment:
Q  312 catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgta 368  Q
    ||||| |||||||| || ||  |||||||||||| |||||||||||||||| |||||    
T  29210899 catagcattgctagagcctctttatctaatcctaacccccatattttttatgatgta 29210843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 39 - 414
Target Start/End: Original strand, 14785776 - 14786148
Alignment:
Q  39 cttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatg 138  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||| |||||  | ||  ||||||||||||||||||    
T  14785776 cttttgcttggaaaatcatacttttaccattcatcagccacaattttggagaccgagtctctaggcttgcttgacacaat--aagtggctatttcaaatg 14785873  T
Q  139 ggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaa 238  Q
    |||||| || |||||||||||||||  ||| |||| || ||| ||||||||||||||| || | | |||  |||||||| || ||||||||||||||| |    
T  14785874 ggatgcttgatgtactatttgaaactaatttaaaacttatgtatgatgccatcaactcaaactcttctcccagcaatgagttaggtgatcttgtaatcca 14785973  T
Q  239 aagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatct 338  Q
    | |||||||||| ||| | ||||||||| | |||  | |||||||  |||||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  14785974 atgtagaagtcttttatttgatagacccaatttttcaatgtcgtatgttaggaggcaagcaaatggtgttgctcatagtattgctagagcatcactatct 14786073  T
Q  339 aatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaacttt 414  Q
     ||| || ||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  14786074 catcttaacccccttatttttcatcat-taatgcttactttgtattccttaattttgaatgaaatgaagtaacttt 14786148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 260 - 420
Target Start/End: Original strand, 10748038 - 10748198
Alignment:
Q  260 tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt 359  Q
    ||||||||||||||||||||||||  |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||| ||||| |||    
T  10748038 tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagccctcatatcttt 10748137  T
Q  360 tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
     |||||||||  |||||||||||| | |||||||| ||||||||||| |||||||||||||    
T  10748138 catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt 10748198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 369
Target Start/End: Complemental strand, 36757042 - 36756940
Alignment:
Q  267 gactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatcatg 366  Q
    ||||||||||||||||  ||| ||||| |||| |||   ||||| |||||||||||||| || ||  ||||  ||||||||||||||||||| |||||||    
T  36757042 gactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatg 36756943  T
Q  367 taa 369  Q
    |||    
T  36756942 taa 36756940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 406
Target Start/End: Complemental strand, 37670821 - 37670656
Alignment:
Q  241 gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaa 340  Q
    ||||||||||| ||||   ||||  ||||||||| ||||||||  |||| ||| || |||||   ||||  |||||||||||||| |||||  ||||  |    
T  37670821 gtagaagtctcgtactttctagaaacgactttgttgtgtcgtatgttagaaggcaaacaaataaagttgttcatagtattgctagagcatctttatccca 37670722  T
Q  341 tcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
     ||||||||||||||||||||| |||||  | ||||||||||  | |||||| || ||||||||||    
T  37670721 ccctagcccccatattttttatgatgtaccgactactttgtaccctttaattatggatgaaatgaa 37670656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 10747815 - 10747914
Alignment:
Q  45 cttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgc 144  Q
    ||||| ||||||||||| ||| |||||||||||||  | || ||||| |||||| ||||| | || |||||||| ||||||||||| ||| |||| ||||    
T  10747815 cttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgc 10747914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 16468451 - 16468348
Alignment:
Q  264 cccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatc 363  Q
    ||||||| |||||||||||   ||||||||||||||||  |||| || ||||  |||||||| ||  | ||||||||||||||||| ||| | ||||||     
T  16468451 cccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcataacattgctagagctgctctatctaatcctagccctcatgtcttttatg 16468352  T
Q  364 atgt 367  Q
    ||||    
T  16468351 atgt 16468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 6e-69; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 42 - 406
Target Start/End: Complemental strand, 12351047 - 12350683
Alignment:
Q  42 ttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatggga 141  Q
    |||||||| |||||||||||||| |||||||||||||| || |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||| ||    
T  12351047 ttgcttgggaaatcagacttttatcactcatcagccactattttggaggcagaatctctagccttgcttgatgctattaaaatggctatttcaaatgaga 12350948  T
Q  142 tgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaag 241  Q
    |||||| |||| |||||||||| ||||| ||  | ||  |||||||  ||| |  ||| | | | |  | |||||| ||||| |||||||||| | || |    
T  12350947 tgcatgttgtattatttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatg 12350848  T
Q  242 tagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaat 341  Q
    ||||||||| ||||| |||| ||||||||||| |||||||||  |||||||| ||||||||  |||||| |||||||||||| | || || |||||| ||    
T  12350847 tagaagtctattacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcat 12350748  T
Q  342 cctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    |||| ||||||||||||| |||||||| |||||||||||||    ||||||||||||||||||||    
T  12350747 cctatcccccatatttttcatcatgtattgcctactttgtaccatttaattttgaatgaaatgaa 12350683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 40 - 406
Target Start/End: Original strand, 41147522 - 41147888
Alignment:
Q  40 ttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgg 139  Q
    |||| ||||| |||||||||||| | ||||||||||||||  | |||||||| || ||||||| ||| ||||||||||||||| |||||||||||||||     
T  41147522 ttttacttgggaaatcagactttcatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaattggctatttcaaatga 41147621  T
Q  140 gatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaa 239  Q
    |||||||| |||| |||||||||| ||||| ||  | ||  |||||||  ||| |  ||| | | | |  | |||||| ||||| |||||||||| | ||    
T  41147622 gatgcatgttgtattatttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaa 41147721  T
Q  240 agtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatcta 339  Q
     |||||||||||||||| |||| ||||||||||| |||||||||  |||||||| |||||||| ||||||| |||||||||||| | || || ||||||     
T  41147722 tgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctc 41147821  T
Q  340 atcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    |||||||||||||||||||| |||||||| |||||||||||||   | ||||| |||||||||||||    
T  41147822 atcctagcccccatatttttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatgaa 41147888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 420
Target Start/End: Complemental strand, 30305444 - 30305265
Alignment:
Q  241 gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaa 340  Q
    ||||||||||||||||| ||||   ||||||||||| ||||||  || ||||| || ||||| |  |||| |||||||||||||   ||||||||||| |    
T  30305444 gtagaagtctcttactcaatagtttcgactttgtagagtcgtatgtttggaggcaaacaaatagaattgctcatagtattgctaaaacatcactatctca 30305345  T
Q  341 tcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
     ||||| ||||||||||||  |||||||  | ||||||||||| | || |||||| |||||| ||| |||||| ||||||    
T  30305344 ccctagaccccatatttttcgtcatgtatcgtctactttgtatccgttgattttgtatgaaaggaactaacttcgccttt 30305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 403
Target Start/End: Original strand, 513829 - 513983
Alignment:
Q  249 ctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcc 348  Q
    ||||| ||| |||||||||||||||||||||||||  || ||||| |||| ||| | ||||| |||||||||||||| || ||  ||| | |||||| ||    
T  513829 ctcttgctcaatagacccgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctaacc 513928  T
Q  349 cccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaat 403  Q
     |||||||||| ||  ||||    |||||||||| |||||||||  |||||||||    
T  513929 tccatatttttaatgttgtaccttctactttgtactccttaattacgaatgaaat 513983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 43970028 - 43970138
Alignment:
Q  258 gatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattt 357  Q
    |||| |||||||||| ||||||| ||  || | ||| ||||||||   ||||| |||||||||||||| || ||  |||| |||||||||||||||||||    
T  43970028 gataaacccgactttatagtgtcatatgttcgtaggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattt 43970127  T
Q  358 tttatcatgta 368  Q
    | ||| |||||    
T  43970128 tctatgatgta 43970138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 368
Target Start/End: Original strand, 41605361 - 41605464
Alignment:
Q  265 ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatca 364  Q
    |||||||||||||||||||  ||  |||||| ||||||   ||||| |||||||||||||| || ||  |||| ||||  | |||||||||||||||| |    
T  41605361 ccgactttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatccaatctcaacccccatattttttataa 41605460  T
Q  365 tgta 368  Q
    ||||    
T  41605461 tgta 41605464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 40 - 406
Target Start/End: Original strand, 23151037 - 23151403
Alignment:
Q  40 ttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgg 139  Q
    |||| ||||| |||||||||||| | ||||||||||||||  | |||||||| || ||||||| ||| ||||||||||||||| |||||||||||||||     
T  23151037 ttttacttgggaaatcagactttcatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaattggctatttcaaatga 23151136  T
Q  140 gatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaa 239  Q
    |||||||| |||| |||||||||| ||||| ||  | ||  |||||||  ||| |  ||| | | | |  | |||||| ||||| |||||||||| | ||    
T  23151137 gatgcatgttgtattatttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaa 23151236  T
Q  240 agtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatcta 339  Q
     |||||||||||||||| |||| ||||||||||| |||||||||  |||||||| |||||||| ||||||| |||||||||||| | || || ||||||     
T  23151237 tgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctc 23151336  T
Q  340 atcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    |||||||||||||||||||| |||||||| |||||||||||||   | ||||| |||||||||||||    
T  23151337 atcctagcccccatatttttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatgaa 23151403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 212 - 406
Target Start/End: Original strand, 28499116 - 28499310
Alignment:
Q  212 caatgaatttggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcc 311  Q
    |||||| ||||| |||||| ||||| || |||||||||||||| | |||| ||| ||||||  |||||||||  |||||||| |||||||| |||||||     
T  28499116 caatgagtttggagatcttataatccaatgtagaagtctcttatttgataaacctgactttacagtgtcgtatgttaggaggcaagcaaatagtgttgct 28499215  T
Q  312 catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    |||||||||||| | || || |||||| |||||||||||||||||||| |||||||| |||||||||| || |  |||||| |||||||||||||    
T  28499216 catagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttatactgtttaattatgaatgaaatgaa 28499310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 367
Target Start/End: Complemental strand, 13021015 - 13020906
Alignment:
Q  258 gatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattt 357  Q
    |||| |||||||||||||||||||||  || ||||| ||||||||   |||||  ||||||||||||| || ||  |||| ||||||| |||||||||||    
T  13021015 gataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatccaatcctaacccccatattt 13020916  T
Q  358 tttatcatgt 367  Q
    | ||| ||||    
T  13020915 tctatgatgt 13020906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 367
Target Start/End: Complemental strand, 13092539 - 13092430
Alignment:
Q  258 gatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattt 357  Q
    |||| |||||||||||||||||||||  || ||||| ||||||||   |||||  ||||||||||||| || ||  |||| ||||||| |||||||||||    
T  13092539 gataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtcgttatccaatcctaacccccatattt 13092440  T
Q  358 tttatcatgt 367  Q
    | ||| ||||    
T  13092439 tctatgatgt 13092430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 34893821 - 34893753
Alignment:
Q  352 atattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
    |||||||| |||||||| |||||||||||||    |||||||||||||||||||| | ||| |||||||    
T  34893821 atatttttcatcatgtattgcctactttgtaccaattaattttgaatgaaatgaattgactctgccttt 34893753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 10813233 - 10813136
Alignment:
Q  265 ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat 362  Q
    ||||||||  |||||| || ||| ||||| |||| ||| | ||||| |||||||| ||||| || ||  ||||| |||||||||||||| ||||||||    
T  10813233 ccgactttaaagtgtcatatattcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttat 10813136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 420
Target Start/End: Original strand, 7274525 - 7274681
Alignment:
Q  264 cccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatc 363  Q
    ||||||| |||||||||||  ||||||||| ||| |||| |||| || |||| |||||| || |   | |||||  |||||||||||||| | ||||||     
T  7274525 cccgactatgtagtgtcgtttattaggaggcaagaaaatagtgtggctcataatattgcgagagatgctctatcgtatcctagcccccatgtcttttatg 7274624  T
Q  364 atgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
    ||||     |||| ||||||||  || || ||||||||||| ||||| |||||||||    
T  7274625 atgttcctactaccttgtattctctatttgtgaatgaaatggagtaattttgccttt 7274681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 40 - 406
Target Start/End: Original strand, 32499314 - 32499680
Alignment:
Q  40 ttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgg 139  Q
    |||| ||||| |||||||||||| | ||||||||||||||  | |||||||| || ||||||| ||| ||||||||||||||| |||||||||||||||     
T  32499314 ttttacttgggaaatcagactttcatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaattggctatttcaaatga 32499413  T
Q  140 gatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaa 239  Q
    |||||||| |||| |||||||||| ||||| ||  | ||  |||||||  ||| |  ||| | | | |  | |||||| ||||| |||||||||| | ||    
T  32499414 gatgcatgttgtattatttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaa 32499513  T
Q  240 agtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatcta 339  Q
     |||||||||||||||| |||| ||||||||||| |||||||||  |||||||| |||||||| ||||||| |||||||||||| | || || ||||||     
T  32499514 tgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctc 32499613  T
Q  340 atcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    |||||||||||||||||||| |||||||| |||||||||||||   | ||||| |||||||||||||    
T  32499614 atcctagcccccatatttttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatgaa 32499680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 420
Target Start/End: Complemental strand, 42327995 - 42327835
Alignment:
Q  260 tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt 359  Q
    ||||||||||||||||||||||||  |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||||||||| |||    
T  42327995 tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt 42327896  T
Q  360 tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
     |||||||||  |||||||||||| | |||||||| ||||||||||| |||||||||||||    
T  42327895 catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt 42327835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 222 - 420
Target Start/End: Original strand, 1480981 - 1481177
Alignment:
Q  222 ggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattg 321  Q
    |||||||||||||   || |||||||| |  ||||  |||||||| ||||||||||||||||   ||||||| |||||||| | ||| | ||||||||||    
T  1480981 ggtgatcttgtaactcaatgtagaagtttactacttaatagacccaactttgtagtgtcgtatgataggaggcaagcaaatagagttactcatagtattg 1481080  T
Q  322 ctagggcatcactatctaatcctagcccccatattttttatcatgtaat---gcctactttgtattccttaattttgaatgaaatgaagtaactttgcct 418  Q
     ||| ||||||||||||      ||||||||||| ||| ||||||||||   ||| ||||| |||   |||||||| ||||||||||| |||||||| ||    
T  1481081 ttagagcatcactatct-----cagcccccatatctttcatcatgtaataaggccgactttctatctgttaatttttaatgaaatgaattaactttgtct 1481175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 268 - 406
Target Start/End: Complemental strand, 54421494 - 54421356
Alignment:
Q  268 actttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatcatgt 367  Q
    |||||||||||||||  ||| ||||| |||| |||   ||||  |||||||||||||| || ||  ||||  ||||||||||||||||||| ||||||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatgt 54421395  T
Q  368 aatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    ||   |||||||||| || || |||||| |||| |||||    
T  54421394 aacaactactttgtactctttgattttggatgatatgaa 54421356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 42328210 - 42328111
Alignment:
Q  45 cttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgc 144  Q
    ||||| ||||||||||| ||| |||||||||||||  | || ||||| |||||| ||||| | || |||||||| ||||||||||| ||| |||| ||||    
T  42328210 cttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgc 42328111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 2262648 - 2262684
Alignment:
Q  111 gatgctattaaagtggctatttcaaatgggatgcatg 147  Q
    ||||||||||||||||||||||||||||  |||||||    
T  2262648 gatgctattaaagtggctatttcaaatgaaatgcatg 2262684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 412
Target Start/End: Original strand, 43733950 - 43734050
Alignment:
Q  312 catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaac 411  Q
    |||||||||||||| ||  |  ||||| |||||||||||||||| ||| || |||||    |||||| ||||||||| ||| | ||||||||| ||||||    
T  43733950 catagtattgctagagctgccttatctcatcctagcccccatatctttcatgatgtatcttctacttggtattccttgattattaatgaaatgcagtaac 43734049  T
Q  412 t 412  Q
    |    
T  43734050 t 43734050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 45 - 406
Target Start/End: Complemental strand, 11292 - 10931
Alignment:
Q  45 cttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgc 144  Q
    ||||| |||||||||||||| ||||||||||||||  | |||||||| || ||||||| ||| ||||||| ||||||||||||||||||||||| |||||    
T  11292 cttgggaaatcagacttttatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgatattaaagtggctatttcaaatgagatgc 11193  T
Q  145 atgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtag 244  Q
    ||| |||| |||||||||| ||||| ||  | ||  |||||||  ||| |  ||| | | | |  | |||||| ||||| |||||||||| | || ||||    
T  11192 atgttgtattatttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtag 11093  T
Q  245 aagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcct 344  Q
    |||||||||||| |||| ||||||||||| |||||||||  |||||||| |||||||| ||||||| | |||||||||| | || || |||||| |||||    
T  11092 aagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcct 10993  T
Q  345 agcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa 406  Q
    ||||||||||||||| |||||||| |||||||||||||   | ||||| |||||||||||||    
T  10992 agcccccatatttttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatgaa 10931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 259 - 420
Target Start/End: Complemental strand, 34752783 - 34752622
Alignment:
Q  259 atagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatatttt 358  Q
    |||||||||||||||||||||||||  |||||||| |||||||| |  |||| |||||||||||||| |||||||||||| | |||||||||||||| ||    
T  34752783 atagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctcatagtattgctagagcatcactatctcaccctagcccccatatctt 34752684  T
Q  359 ttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
    | |||||||||  |||||||||||| | |||||||| ||||||||||| |||||||||||||    
T  34752683 tcatcatgtaacacctactttgtatccgttaatttttaatgaaatgaattaactttgccttt 34752622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 420
Target Start/End: Complemental strand, 9180823 - 9180663
Alignment:
Q  260 tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt 359  Q
    ||||||||||||||||||||||||  |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||||||||| |||    
T  9180823 tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt 9180724  T
Q  360 tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
     |||||||||  |||||||||||| | |||||||| ||||||||||| |||||||||||||    
T  9180723 catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt 9180663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 259 - 416
Target Start/End: Original strand, 11629487 - 11629644
Alignment:
Q  259 atagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatatttt 358  Q
    |||||||||||||||||||||||||  |||||||| |||||||| | ||||| |||||||||||||| |||||| ||||| | ||||| |||||||| ||    
T  11629487 atagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctaggccccatatctt 11629586  T
Q  359 ttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgc 416  Q
    | ||||||||   |||||||||||| | |||||||| ||||||||||| |||||||||    
T  11629587 tcatcatgtagcacctactttgtatccgttaatttttaatgaaatgaattaactttgc 11629644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 34752997 - 34752899
Alignment:
Q  45 cttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatg 143  Q
    ||||| ||||||||||| ||| |||||||||||||  | || |||||||||||| ||||| | || |||||||| ||||||||||| ||| |||| |||    
T  34752997 cttggcaaatcagacttctactactcatcagccactgttttagaggccgagtctttaggccttctagatgctatcaaagtggctatctcacatggaatg 34752899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 9181038 - 9180939
Alignment:
Q  45 cttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgc 144  Q
    ||||| ||||||||||| ||| |||||||||||||  | || ||||| |||||| ||||| | || |||||||| ||||||||||| ||| |||| ||||    
T  9181038 cttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgc 9180939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 7593712 - 7593613
Alignment:
Q  90 gccgagtctctaggcttactt--gatgctattaaagtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgc 187  Q
    ||||||||| ||||||||||   ||| ||||||||||| ||||||||||||| ||||||| |||  | |||||||  ||||  ||| |||||||||||||    
T  7593712 gccgagtctttaggcttactatagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaattgatttcaaagttttgtctgatgc 7593613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 11629279 - 11629372
Alignment:
Q  51 aaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgc 144  Q
    ||||||||||| ||| ||||||| |||||  | || ||||| |||||| ||||| | || |||||||| ||||||||||| ||| |||| ||||    
T  11629279 aaatcagacttctactactcatcggccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgc 11629372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 10394672 - 10394776
Alignment:
Q  312 catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaac 411  Q
    |||||||||||||| |||||  ||||| |||||| |||| |||||||| || ||||||   || |||||||    ||||||| |||||||||||| || |    
T  10394672 catagtattgctagcgcatctttatctcatcctaacccctatatttttcatgatgtaacaacttctttgtacatgttaatttggaatgaaatgaattagc 10394771  T
Q  412 tttgc 416  Q
    |||||    
T  10394772 tttgc 10394776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 420
Target Start/End: Complemental strand, 10159047 - 10158887
Alignment:
Q  260 tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt 359  Q
    ||||||||||||||||||||||||  |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||||||||| |||    
T  10159047 tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt 10158948  T
Q  360 tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt 420  Q
     |||||||||  |||||||||||| | |||||||| ||||||||||| |||||||||||||    
T  10158947 catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt 10158887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 10159262 - 10159163
Alignment:
Q  45 cttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgc 144  Q
    ||||| ||||||||||| ||| |||||||||||||  | || ||||| |||||| ||||| | || |||||||| ||||||||||| ||| |||| ||||    
T  10159262 cttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgc 10159163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 414
Target Start/End: Original strand, 16863312 - 16863383
Alignment:
Q  343 ctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaacttt 414  Q
    |||||||||||||||| ||| |||||  || |||||||||||| || ||| ||||||||||| | |||||||    
T  16863312 ctagcccccatattttctataatgtaccgcttactttgtattctttgattatgaatgaaatgcattaacttt 16863383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 405
Target Start/End: Complemental strand, 1652 - 1496
Alignment:
Q  249 ctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcc 348  Q
    ||||| ||| |||||||||||||||||||||||||  || ||||| |||| ||| | ||||| |||||||||||||| || ||  ||| | |||||||||    
T  1652 ctcttgctcaatagacccgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcc 1553  T
Q  349 cccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatga 405  Q
    ||||||||||| ||  ||||    |||||||||| ||||||||| ||||||||||||    
T  1552 cccatatttttaatgttgtaccttctactttgtactccttaattatgaatgaaatga 1496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 188492 - 188397
Alignment:
Q  241 gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactat 336  Q
    ||||||||||||||||   |||||||||||||||||| ||||| ||||||||  ||| |||| | ||||| |||| ||||||||| || |||||||    
T  188492 gtagaagtctcttacttattagacccgactttgtagtatcgtatattaggagacaagtaaatagagttgctcataatattgctagagcctcactat 188397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 3060 - 2961
Alignment:
Q  90 gccgagtctctaggcttactt--gatgctattaaagtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgc 187  Q
    ||||||||| ||||||||||   ||| ||||||||||| ||||||||||||| ||||||| |||  | |||||||  ||||  ||| |||||||||||||    
T  3060 gccgagtctttaggcttactatagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaattgatttcaaagttttgtctgatgc 2961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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