View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743_high_3 (Length: 469)

Name: NF1743_high_3
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743_high_3
NF1743_high_3
[»] chr8 (3 HSPs)
chr8 (1-451)||(4618788-4619238)
chr8 (211-451)||(4788191-4788431)
chr8 (211-451)||(4296749-4296989)
[»] chr1 (13 HSPs)
chr1 (6-451)||(45984424-45984861)
chr1 (121-451)||(38138591-38138921)
chr1 (181-443)||(43044279-43044541)
chr1 (181-443)||(43067450-43067712)
chr1 (181-443)||(43083123-43083385)
chr1 (181-443)||(3300013-3300275)
chr1 (181-451)||(43077319-43077589)
chr1 (179-451)||(7891683-7891955)
chr1 (205-445)||(50911744-50911984)
chr1 (187-350)||(40035528-40035691)
chr1 (6-76)||(43067815-43067885)
chr1 (6-76)||(43044106-43044176)
chr1 (6-76)||(43082950-43083020)
[»] chr5 (1 HSPs)
chr5 (167-449)||(16348412-16348694)
[»] chr4 (3 HSPs)
chr4 (178-443)||(4230741-4231006)
chr4 (205-313)||(19965396-19965504)
chr4 (402-451)||(19965286-19965335)
[»] chr6 (2 HSPs)
chr6 (180-433)||(7530008-7530261)
chr6 (181-433)||(7520471-7520723)
[»] chr2 (6 HSPs)
chr2 (205-447)||(33860137-33860379)
chr2 (187-337)||(16231466-16231616)
chr2 (205-254)||(34690143-34690192)
chr2 (205-254)||(34712555-34712604)
chr2 (393-449)||(34690331-34690387)
chr2 (393-449)||(34712743-34712799)


Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 4618788 - 4619238
Alignment:
Q  1 tgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618788 tgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacga 4618887  T
Q  101 tgcactttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618888 tgcactttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagc 4618987  T
Q  201 cttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtg 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618988 cttaatgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtg 4619087  T
Q  301 ggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4619088 ggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttat 4619187  T
Q  401 caaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4619188 caaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 4619238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 211 - 451
Target Start/End: Complemental strand, 4788431 - 4788191
Alignment:
Q  211 ccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatct 310  Q
    ||||||||||||||| || | | || || |||| ||||| |||| |||| ||||||   | | |||| |||||||||||| ||||||||||||| |||||    
T  4788431 ccaacagccacagtttgatgcaagtatcggacaacaaaatggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaaccatct 4788332  T
Q  311 taataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttgac 410  Q
     |||||  ||| ||||||||||||||| ||||   |||   | ||||||||||| |||||||    |||||| ||||   | ||||| |||||| | |||    
T  4788331 caataagaccatcatcaccattcttcaagaatgcaggcctctcctcaattacctaaccagaatgattgtcaaccttgcaaataagctcatcaaattcgac 4788232  T
Q  411 agcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 451  Q
    |||| | |||||||||||||| ||||||| ||| |||||||    
T  4788231 agcaatttgggaggtgtggcagtgaagaataggcgtatagc 4788191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 451
Target Start/End: Original strand, 4296749 - 4296989
Alignment:
Q  211 ccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatct 310  Q
    |||||||||||| || || | | ||||  |||| ||||||||| ||||| |||| |   ||| |||| |||||||||||| | || ||||||||||||||    
T  4296749 ccaacagccacaatttgatgcaagtcttggacaacaaaacggctgagtggaggagatagagagaaaggctctaccaccatagactcggtgggaatcatct 4296848  T
Q  311 taataatgccagcatcaccattcttcaggaatt-tgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttga 409  Q
    ||||||  | |   ||||||||||||| ||||  ||||| | |||||||||| ||||  ||||||   ||||| ||||   | ||||| | |||| ||||    
T  4296849 taataagacaattgtcaccattcttcaagaatggtgggcgc-ttctcaattatcttatgagaacaatagtcaaccttgtaaataagctcagcaaatttga 4296947  T
Q  410 cagcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 451  Q
    ||| | |||||||||||||||| ||||||| |||||||||||    
T  4296948 caggaatgtgggaggtgtggcagtgaagaataggtgtatagc 4296989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 6 - 451
Target Start/End: Complemental strand, 45984861 - 45984424
Alignment:
Q  6 gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacgatgcac 105  Q
    |||||||||| |||||||| |||||||||||||||||||||  ||  ||||||||||| |||||||||||||| ||||    |||||||| |||||  |     
T  45984861 gtgcagacttcacacttaatctgcaaaacaagtttactagaggagaaatagaaatactaaggaccaaagactatttatg---gtaataacaacgataga- 45984766  T
Q  106 tttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaa 205  Q
    ||||  |  |    ||||||||| |||||| |||| || | ||||  ||| ||||||||  ||||||||||| ||||||||||||||||||||||||| |    
T  45984765 tttcgctaga----tagatcatcttgcacagttcattttttcaatatcgacttagtgattttacctcctgcagcaggatccttcttcttcacagccttga 45984670  T
Q  206 tgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaat 305  Q
    |||||||||||||||||||| || |   |||||||||| ||||||||||||||| ||||||   ||| |||| |||||||||||| ||||||||||||||    
T  45984669 tgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtgggaat 45984570  T
Q  306 catcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaac 405  Q
    |||||||||||| |||| ||||||| || |||  |||||||||||  |||||||| ||| ||||||||||||||||| |||||  | ||||| | |||||    
T  45984569 catcttaataataccagtatcaccactcatcaaaaatttgggctccctctcaatttcctcaccagaacacctgtcaaccttggaaataagctcagcaaac 45984470  T
Q  406 ttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 451  Q
    ||||||||| |||||||||||||||| | |||||||||||| ||||    
T  45984469 ttgacagcaatgtgggaggtgtggcagtcaagaacaggtgtgtagc 45984424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 121 - 451
Target Start/End: Complemental strand, 38138921 - 38138591
Alignment:
Q  121 agatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaatgactccaacagcca 220  Q
    |||||||||||||  |||||||||| ||||||| | |||| |||  ||||| |||||  ||||||||||||||||||| || | ||||||||||||||||    
T  38138921 agatcatcctgcaagattcacttcttcaatgcctacttagcgatcttaccttctgcatgaggatccttcttcttcacaaccatgatgactccaacagcca 38138822  T
Q  221 cagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatcttaataatgcc 320  Q
    ||||| |||| ||||||||||||||||||||||| |||| ||||||| ||||||||  |||||||||||||| |||||||||||||||||||| ||  ||    
T  38138821 cagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtgggaatcatcttaacaacacc 38138722  T
Q  321 agcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgg 420  Q
    ||||||||||||||||| |||||||||||| ||||| ||| ||  ||||||| ||||||||| |||||  | ||||||| |||||||||||| |  ||||    
T  38138721 agcatcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacctgtcaaacttggtaacaagcttagcaaacttgacaggaacgtgg 38138622  T
Q  421 gaggtgtggcaatgaagaacaggtgtatagc 451  Q
    ||||||||||| |  |||| |||||||||||    
T  38138621 gaggtgtggcagtccagaataggtgtatagc 38138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 181 - 443
Target Start/End: Original strand, 43044279 - 43044541
Alignment:
Q  181 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 280  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| | ||| |||||||    
T  43044279 ggatccttcttctccacagccttgatgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtct 43044378  T
Q  281 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 380  Q
    | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||  |||||||||||| ||| ||    
T  43044379 caaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatc 43044478  T
Q  381 aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacagg 443  Q
    |||||| |  | ||||| | |||||||||||||| |||||||||||||||| | |||||||||    
T  43044479 aatcttagtaacaagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacagg 43044541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 181 - 443
Target Start/End: Complemental strand, 43067712 - 43067450
Alignment:
Q  181 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 280  Q
    ||||||||||||| |||||| || ||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| | ||| |||||||    
T  43067712 ggatccttcttctccacagctttgatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtct 43067613  T
Q  281 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 380  Q
    | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||  |||||||||||| ||| ||    
T  43067612 caaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatc 43067513  T
Q  381 aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacagg 443  Q
    |||||| |  | ||||| | |||||||||||||| |||||||||||||||| | |||||||||    
T  43067512 aatcttagtaacaagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacagg 43067450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 181 - 443
Target Start/End: Original strand, 43083123 - 43083385
Alignment:
Q  181 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 280  Q
    ||||||||||||| |||||| || ||||| ||||||||||||||| |||| |||||||| ||||||||||| ||||||| |||||| | ||| |||||||    
T  43083123 ggatccttcttctccacagctttgatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtct 43083222  T
Q  281 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 380  Q
    | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||  |||||||||||| ||| ||    
T  43083223 caaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatc 43083322  T
Q  381 aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacagg 443  Q
    |||||| |  | ||||| | |||||||||||||| |||||||||||||||| | |||||||||    
T  43083323 aatcttagtaacaagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacagg 43083385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 181 - 443
Target Start/End: Original strand, 3300013 - 3300275
Alignment:
Q  181 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 280  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||  |||| || || |||||||| |||||||| |||| |||||| | ||| |||||||    
T  3300013 ggatccttcttctccacagccttgatgacaccaacagccacagtctgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 3300112  T
Q  281 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 380  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||  |||| ||||||| ||||||    
T  3300113 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 3300212  T
Q  381 aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacagg 443  Q
    |||||| |  | ||||| | |||| ||||||||| |||||||||||||||| | |||||||||    
T  3300213 aatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacagg 3300275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 181 - 451
Target Start/End: Complemental strand, 43077589 - 43077319
Alignment:
Q  181 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 280  Q
    |||||||||| || ||||||| | ||||| ||||||||||||||| ||||  |||| |||| || ||||||||| |||| |||||| | ||| |||||||    
T  43077589 ggatccttctactccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtct 43077490  T
Q  281 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 380  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||   ||||||| ||| ||||||||| ||| ||    
T  43077489 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatttgggcttcgtctcaatcaccataccagaacgcctatc 43077390  T
Q  381 aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 451  Q
    ||||||||  | ||||| |||||||||||||  | ||||| |||||||||| ||||||||||||| |||||    
T  43077389 aatcttggtaacaagctcatcaaacttgacaagaatgtggaaggtgtggcagtgaagaacaggtgcatagc 43077319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 179 - 451
Target Start/End: Complemental strand, 7891955 - 7891683
Alignment:
Q  179 caggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagt 278  Q
    |||||||||| ||||||||| |||| |||||||||| |||||||||| |||| |||||||||||||||||||| || |||||||||||   || ||||||    
T  7891955 caggatccttattcttcacatccttgatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagt 7891856  T
Q  279 ctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctg 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||| | |   |  || |  ||||    
T  7891855 ctctaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaaattcaacattagtattcctg 7891756  T
Q  379 tcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 451  Q
    |||| ||||   | ||||||  |||||||||||||| |||||||||||||||| |  |||| |||||||||||    
T  7891755 tcaaacttgctaacaagcttggcaaacttgacagcaatgtgggaggtgtggcagtcgagaataggtgtatagc 7891683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 205 - 445
Target Start/End: Original strand, 50911744 - 50911984
Alignment:
Q  205 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 304  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||    
T  50911744 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtgggaa 50911843  T
Q  305 tcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaa 404  Q
    |||||| |||||  ||||| ||||||||||||| |||||||||||| ||||||||| ||  |  | ||  |||  || ||||||  | ||||||| ||||    
T  50911844 tcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaatttccacaaaataatgcctaacattcttggtaacaagcttagcaaa 50911943  T
Q  405 cttgacagcagtgtgggaggtgtggcaatgaagaacaggtg 445  Q
    |||||||||| ||| ||| ||||||||||||||||||||||    
T  50911944 cttgacagcaatgttggacgtgtggcaatgaagaacaggtg 50911984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 350
Target Start/End: Complemental strand, 40035691 - 40035528
Alignment:
Q  187 ttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctacca 286  Q
    |||||| ||||| |||| |||||||||||||| |||||||||||  |||||||||| | ||||||| | ||||||| ||| || | |  || ||||||||    
T  40035691 ttcttcgtcacatccttgatgactccaacagcgacagttcgacgcgtgtctctgactgtaaaacgggcaagtgaagaatattttgcattaggctctacca 40035592  T
Q  287 ccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctc 350  Q
    ||||||||||||| |||||||| | || ||  ||  |||||||||||| || ||||||||||||    
T  40035591 ccatgggcttggttggaatcatttcaacaagccccccatcaccattctccaagaatttgggctc 40035528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 43067885 - 43067815
Alignment:
Q  6 gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac 76  Q
    |||||||||||||||||||  || |||||||||  ||||||| ||  ||||||||||| ||||||||||||    
T  43067885 gtgcagacttgacacttaatatgaaaaacaagtaaactagactagaaatagaaatactaaggaccaaagac 43067815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 43044106 - 43044176
Alignment:
Q  6 gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac 76  Q
    |||||||||||||||||||  || |||||||||  ||||||  ||  ||||||||||| ||||||||||||    
T  43044106 gtgcagacttgacacttaatatgaaaaacaagtaaactagaagagaaatagaaatactaaggaccaaagac 43044176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 43082950 - 43083020
Alignment:
Q  6 gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac 76  Q
    |||||||||||||||||||  || |||||||||  ||||||| ||  ||||||||||| |||||| |||||    
T  43082950 gtgcagacttgacacttaatatgaaaaacaagtaaactagacgagaaatagaaatactaaggacccaagac 43083020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 167 - 449
Target Start/End: Original strand, 16348412 - 16348694
Alignment:
Q  167 tacctcctgcaccaggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggata 266  Q
    |||||| | ||| |||||||||||| |||||| ||   |||| ||||| |||||||||| || |  | |||||||||  |||||||||||||||||||||    
T  16348412 tacctctttcactaggatccttcttgttcacaaccaagatgattccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggata 16348511  T
Q  267 attagaaaaagtctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattacctta 366  Q
     | ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||| ||| |||||| |||     
T  16348512 ttcagaaaaagtctctaccaccatgggcttggtgggaatcatctgaataatgccaccatcacctttcttcaagaatttgggctccttcacaattatcttg 16348611  T
Q  367 ccagaacacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtata 449  Q
    |||||| ||||||| | |||||| ||||||||| |||||||||||||| ||| |||||||||||| | |||||||||||||||    
T  16348612 ccagaaaacctgtctaccttggcaagaagcttagcaaacttgacagcaatgtaggaggtgtggcagttaagaacaggtgtata 16348694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 178 - 443
Target Start/End: Original strand, 4230741 - 4231006
Alignment:
Q  178 ccaggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaag 277  Q
    ||||| |||||||||| |||| |||| || || ||||||||||||||| | || || |||||||||||||||||||| |||| |||||| | ||| ||||    
T  4230741 ccaggttccttcttctccacacccttgataaccccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaag 4230840  T
Q  278 tctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacct 377  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||  |||||||||||| |||    
T  4230841 tctcaaccaccatgggcttggtgggaatcatcttaataataccagcatctccattcttcaggaatttaggctccttctcgatctccttaccagaacgcct 4230940  T
Q  378 gtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacagg 443  Q
    ||||||||| |  | ||||| | |||||||||| ||| |||||||||||||||| | |||||||||    
T  4230941 gtcaatcttagtaacaagctcagcaaacttgactgcaatgtgggaggtgtggcagtcaagaacagg 4231006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 19965504 - 19965396
Alignment:
Q  205 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 304  Q
    |||||||||| |||||||||| |||| ||||||||  || |||||| |||||||| |||||| | ||| |||| |||||||||||| ||||||| |||||    
T  19965504 atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa 19965405  T
Q  305 tcatcttaa 313  Q
    |||||||||    
T  19965404 tcatcttaa 19965396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 19965335 - 19965286
Alignment:
Q  402 aaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagc 451  Q
    ||||| ||||||| |||||||||||||||| | |||||||||||||||||    
T  19965335 aaactcgacagcaatgtgggaggtgtggcagtcaagaacaggtgtatagc 19965286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 180 - 433
Target Start/End: Complemental strand, 7530261 - 7530008
Alignment:
Q  180 aggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtc 279  Q
    |||||||||||||| ||||||||| ||||| |||||||| |||||| |||| ||||| |||||||||||||| || || | |||||| | || ||| |||    
T  7530261 aggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtc 7530162  T
Q  280 tctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgt 379  Q
    || |||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||| |||||||| ||||||||  |||||||||| | |||||    
T  7530161 tcaaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctccttctcaatctccttaccagatcgcctgt 7530062  T
Q  380 caatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaat 433  Q
    |||||||||  | ||| | | ||||||| |||||| |||| |||||||||||||    
T  7530061 caatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaat 7530008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 181 - 433
Target Start/End: Complemental strand, 7520723 - 7520471
Alignment:
Q  181 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 280  Q
    ||||||||||||| ||||||||| ||||| |||||||| |||||| |||| ||||| ||||| |||||||| || || | |||||| | ||  || ||||    
T  7520723 ggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtct 7520624  T
Q  281 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 380  Q
    | |||||||||||||||||||||| ||||||||| || ||||||||||| ||||||| ||| |||||||| ||||||||  |||||||||| | ||||||    
T  7520623 caaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctccttctcaatctccttaccagatcgcctgtc 7520524  T
Q  381 aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaat 433  Q
    ||||||||  | ||| | | ||||||| |||||| |||| |||||||||||||    
T  7520523 aatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaat 7520471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 205 - 447
Target Start/End: Original strand, 33860137 - 33860379
Alignment:
Q  205 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 304  Q
    ||||| |||| |||||||||| ||||  |||||||  || ||||||||||||||| |||||||| ||  |||  |||||||||||| |||||||||||||    
T  33860137 atgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 33860236  T
Q  305 tcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaa 404  Q
    |||||||||||    ||||||||||| |||||| |||||  ||||| ||||||||| |||||||| || ||| ||||| |||||| | ||||| | ||||    
T  33860237 tcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtcaaccttggcaataagctcaacaaa 33860336  T
Q  405 cttgacagcagtgtgggaggtgtggcaatgaagaacaggtgta 447  Q
    | ||||||||  ||||||||||||||| | ||||| |||||||    
T  33860337 catgacagcaacgtgggaggtgtggcagtcaagaataggtgta 33860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 337
Target Start/End: Original strand, 16231466 - 16231616
Alignment:
Q  187 ttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctacca 286  Q
    |||||||| |||| | | ||||||||||||||||||||| |||| |||||||||||||||||||| || || |||||||| | |   | |  ||| ||||    
T  16231466 ttcttctttacagacattatgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccacca 16231565  T
Q  287 ccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttca 337  Q
    |||| |||||  | ||||||||||||| ||| || ||||||||||||||||    
T  16231566 ccataggcttcataggaatcatcttaacaattcctgcatcaccattcttca 16231616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 34690143 - 34690192
Alignment:
Q  205 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggcc 254  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  34690143 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggcc 34690192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 34712555 - 34712604
Alignment:
Q  205 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggcc 254  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  34712555 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggcc 34712604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 34690331 - 34690387
Alignment:
Q  393 aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtata 449  Q
    ||||||| |||||||||||||||||||||||| |||||| | ||| ||||| |||||    
T  34690331 aagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacaggagtata 34690387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 34712743 - 34712799
Alignment:
Q  393 aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtata 449  Q
    ||||||| |||||||||||||||||||||||| |||||| | ||| ||||| |||||    
T  34712743 aagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacaggagtata 34712799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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