View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743_high_8 (Length: 249)

Name: NF1743_high_8
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743_high_8
NF1743_high_8
[»] chr1 (7 HSPs)
chr1 (14-117)||(4569004-4569107)
chr1 (16-116)||(14704165-14704265)
chr1 (136-243)||(14704010-14704108)
chr1 (152-242)||(4568344-4568433)
chr1 (10-104)||(49042391-49042479)
chr1 (14-62)||(49058280-49058328)
chr1 (188-243)||(49041220-49041275)
[»] chr3 (4 HSPs)
chr3 (14-108)||(9764028-9764122)
chr3 (14-113)||(9778481-9778580)
chr3 (14-62)||(9770168-9770216)
chr3 (14-67)||(9784186-9784239)
[»] chr7 (1 HSPs)
chr7 (14-62)||(22642651-22642699)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 4569107 - 4569004
Alignment:
Q  14 ttctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtgctaattacttaatgcatagtatgaatgaatcacgtgtgaaaatattcaaaa 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4569107 ttctcatttctgatgttaatttaccaacgaattgtgtggccggtgtgtgctaattacttaatgcatagtatgaatgaatcacgtgtgaaaatattcaaaa 4569008  T
Q  114 tagt 117  Q
    ||||    
T  4569007 tagt 4569004  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 14704265 - 14704165
Alignment:
Q  16 ctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtgctaattacttaatgcatagtatgaatgaatcacgtgtgaaaatattcaaaata 115  Q
    |||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14704265 ctcatttctgatgtaaattcaccaacgaattttgtggccggtgtgtgctaattacttaatgcatagtatgaatgaatcacgtgtgaaaatattcaaaata 14704166  T
Q  116 g 116  Q
    |    
T  14704165 g 14704165  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 14704108 - 14704010
Alignment:
Q  136 aagcaaattttaccacagacaacattatattccaattctttcaacaacaaaaaacatcatattctaattatctatggctcttttataataaataggctgg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  14704108 aagcaaattttaccacagacaacattatattccaattctttcaacaacaaaaaacatcatatt---------tatggctcttttataataaataggctgg 14704018  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 4568433 - 4568344
Alignment:
Q  152 agacaacattatattccaattctttcaacaacaaaaaacatcatattctaattatctatggctcttttataataaataggctggacataca 242  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  4568433 agacaacattatattctaattctttcaacaacaaaaa-catcatattctaattatctatggctcttttataataaataggttggtcataca 4568344  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 49042479 - 49042391
Alignment:
Q  10 attattctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtgctaattacttaatgcatagtatgaatgaatcacgtgtgaaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||   |||||||||||||||||||||||    
T  49042479 attattctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtgtta---gcttaatgca---tatgaatgaatcacgtgtgaaaa 49042391  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 49058328 - 49058280
Alignment:
Q  14 ttctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtg 62  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||    
T  49058328 ttctcaattctgatgttaatttaccaatgaagtgtgtggccggtgtgtg 49058280  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 49041275 - 49041220
Alignment:
Q  188 aacatcatattctaattatctatggctcttttataataaataggctggacatacaa 243  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  49041275 aacatcgtatgctaattatctacggctcttttataataaataggctggtcatacaa 49041220  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 9764028 - 9764122
Alignment:
Q  14 ttctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtgctaattacttaatgcatag-tatgaatgaatcacgtgtgaaaatatt 108  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |  ||  || | |||||||||||||||||||||||||||    
T  9764028 ttctcatttctaatgttaatttaccaatgaagtgtgtggccggtgtgtgttaattagtgcat-tatggatatgaatgaatcacgtgtgaaaatatt 9764122  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 9778481 - 9778580
Alignment:
Q  14 ttctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtgctaattacttaatgcatag-tatgaatgaatcacgtgtgaaaatattcaaa 112  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| || |  ||  || | ||||||||||||||||||||||||||| |||    
T  9778481 ttctcatttctaatgttaatttaccaatgaagtgtgtggccggtgtgtgttaactaatgcat-tatggatatgaatgaatcacgtgtgaaaatattgaaa 9778579  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 9770168 - 9770216
Alignment:
Q  14 ttctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtg 62  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  9770168 ttctcatttctaatgttaatttaccaatgaagtgtgtggccggtgtgtg 9770216  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 9784186 - 9784239
Alignment:
Q  14 ttctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtgctaat 67  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||    
T  9784186 ttctcatttctaatgttaatttaccattgaagtgtgtggccggtgtgtgttaat 9784239  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 22642699 - 22642651
Alignment:
Q  14 ttctcatttctgatgttaatttaccaatgaattgtgtggccggtgtgtg 62  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||||    
T  22642699 ttctcaattctgatgttaatttaccaataaagtgtgtggccggtgtgtg 22642651  T

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