View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743_low_11 (Length: 250)
Name: NF1743_low_11
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 2793395 - 2793517
Alignment:
| Q |
118 |
ttatatcgattcctaaaccgaaaaaactgtttgacacctgtttctttcatacttccaatttgcaggctcttcctgtattcctatataaaatcaccaatcc |
217 |
Q |
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| T |
2793395 |
ttatatcgattcctaaaccgaaaaaactgtttaacacccgttgctttcaaacttccaatctgcaggctcttcctatattcctatataaaatcaccaatcc |
2793494 |
T |
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| Q |
218 |
atttcttgccatcattgtctctg |
240 |
Q |
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| T |
2793495 |
atttcttgccatcattgtctctg |
2793517 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2793278 - 2793312
Alignment:
| Q |
1 |
tatatgaaataactagttatacataagtgctttta |
35 |
Q |
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| T |
2793278 |
tatatgaaataactagttatacataagtgctttta |
2793312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 48668020 - 48668099
Alignment:
| Q |
161 |
ctttcatacttccaatttgcaggctcttcctgtattcctatataaaatcaccaatccatttcttgccatcattgtctctg |
240 |
Q |
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| T |
48668020 |
ctttcaaacttccaatctgcaggctcttcctatatacctagataaactcttcaatcaatttcttgctatcattctctctg |
48668099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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