View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743_low_13 (Length: 237)
Name: NF1743_low_13
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14703968 - 14703750
Alignment:
| Q |
1 |
tcctatgctgaaataaatattacaaacgtaactattattcattgcaaccatatacaattaagttgtacatccatctttgttatttacatgtgtaattttt |
100 |
Q |
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| T |
14703968 |
tcctatgctgaaataaatattacaaacgtaactattattcattgcaaccatatacaattaagtcatacatccatctttgttatttacatgtgtaattttc |
14703869 |
T |
|
| Q |
101 |
gatgtataataggtctggctaacgtgtgaaaccttgcacataataagttttgttgattttcc--nnnnnnnnnagttggaaattaatgacccttattgtg |
198 |
Q |
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| T |
14703868 |
gatgtataataggtctggctaacgtgtgaaaccttgcacataataagttttgttgattttcctttttttttttagttggaaattaatgacccttattgtg |
14703769 |
T |
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| Q |
199 |
tgcaagattgtagacgtta |
217 |
Q |
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||||||||||||||||||| |
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| T |
14703768 |
tgcaagattgtagacgtta |
14703750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49041178 - 49040957
Alignment:
| Q |
1 |
tcctatgctgaaataaatattacaaacgtaactattattcattgcaaccatatacaattaagttgtacatccatctttgttatttacatgtgtaattttt |
100 |
Q |
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|||||||||||||||||||| |||||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041178 |
tcctatgctgaaataaatatcacaaacgtgacaatttttcattgcaatcatatacaattaagttgtacatccatctttgttatttacatgtgtaattttc |
49041079 |
T |
|
| Q |
101 |
gatgtataatag-gtctggctaacgtgtgaaaccttgcacataataagttttgttgattttccnnnnnnnnnagttggaaattaatgacccttattgtgt |
199 |
Q |
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|| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||| ||| |
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| T |
49041078 |
tatatataatagtgtccggctaacgtgtgaaaccttgcacacggtaagttttgttgatttttcttcttttttagttggaaattaatgatccttatcatgt |
49040979 |
T |
|
| Q |
200 |
gcaagattgtagacgttagaaa |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
49040978 |
gcaagattgtagacgttagaaa |
49040957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 4568204 - 4568052
Alignment:
| Q |
69 |
atccatctttgttatttacatgtgtaatttttgatgtataataggtctggctaacgtgtgaaaccttgcacataataagttttgttgattttccnnnnnn |
168 |
Q |
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| T |
4568204 |
atccatctttattatttacatgtgtaattttcgatgtataataggtctggctaacgtgtgaaaccttgcacataataagttttgttgattttcctttttt |
4568105 |
T |
|
| Q |
169 |
nnnagttggaaattaatgacccttattgtgtgcaagattgtagacgttagaaa |
221 |
Q |
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| T |
4568104 |
tttagttggaaattaatgacccttatcatgtgcaagattgtagacgttagaaa |
4568052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4568301 - 4568221
Alignment:
| Q |
1 |
tcctatgctgaaataaatattacaaacgtaactattattcattgcaaccatatacaattaagttgtacatccatctttgtt |
81 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
4568301 |
tcctatgataaaataaatattacaaacgtaactattattcattgcaatcatatacaattaagtcgtacatccatctttgtt |
4568221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 4566816 - 4566709
Alignment:
| Q |
113 |
gtctggctaacgtgtgaaaccttgcacataataagttttgttgattttccnnnnnnnnnagttggaaattaatgacccttattgtgtgcaagattgtaga |
212 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
4566816 |
gtctggctaacgcgtgaaaccttgcacatgataagttttgttgattttcctctttttc-agttggaaattaatgacccttatcgtgtgtaagattgtaga |
4566718 |
T |
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| Q |
213 |
cgttagaaa |
221 |
Q |
| |
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||||||||| |
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| T |
4566717 |
cgttagaaa |
4566709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4566890 - 4566822
Alignment:
| Q |
1 |
tcctatgctgaaataaatattacaaacgtaactattattcattgcaaccatatacaattaagttgtaca |
69 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |
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| T |
4566890 |
tcctatgctgaaataaatattacaaacgtaactatttttcattgcaacctcatacaattaagtcgtaca |
4566822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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