View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743_low_14 (Length: 230)

Name: NF1743_low_14
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743_low_14
NF1743_low_14
[»] chr8 (8 HSPs)
chr8 (67-217)||(37211262-37211412)
chr8 (99-198)||(37216886-37216985)
chr8 (103-198)||(37172545-37172642)
chr8 (139-198)||(37201872-37201931)
chr8 (141-176)||(37182883-37182918)
chr8 (141-176)||(37194015-37194050)
chr8 (8-46)||(37202028-37202066)
chr8 (8-50)||(37217058-37217100)
[»] chr2 (3 HSPs)
chr2 (99-192)||(414932-415028)
chr2 (99-168)||(7527026-7527097)
chr2 (11-50)||(414825-414864)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 37211412 - 37211262
Alignment:
Q  67 ttaaccatcatgaatgtgccttatagatttgcttaaatttctgcagaataaagtaaaaagactagtgagcattgaggttcttgaagtagttgtgttgtta 166  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37211412 ttaaccatcatgaatgtgccttacagatttgcttaaatttctgcagaataaagtaaaaagactagtgagcattgaggttcttgaagtagttgtgttgtta 37211313  T
Q  167 tgctttgttgggctaataaagtctaagaaaaatagcttttgataaccatat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37211312 tgctttgttgggctaataaagtctaagaaaaatagcttttgataaccatat 37211262  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 37216985 - 37216886
Alignment:
Q  99 ttaaatttctgcagaataaagtaaaaagactagtgagcattgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaagaaaaa 198  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| ||||||    
T  37216985 ttaaatttctgcagaataaagtaaaaacactagtgagcattgaggttcttgaagtagttgtgtttttatgctttgtttggctgataaagtctaggaaaaa 37216886  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 37172642 - 37172545
Alignment:
Q  103 atttctgcagaataaagtaaaaagact--agtgagcattgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaagaaaaa 198  Q
    ||||||||| ||||||||||||| |||  || ||||||||||||| ||||||||||||||||| |||||||||||| | | |||||||||||||||||    
T  37172642 atttctgcataataaagtaaaaacactttagcgagcattgaggtttttgaagtagttgtgttgctatgctttgttgtgttgataaagtctaagaaaaa 37172545  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 37201931 - 37201872
Alignment:
Q  139 tgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaagaaaaa 198  Q
    ||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||| |||||    
T  37201931 tgaggttctagaagtagctgtgttgttatgctttgttgggctgataaagtataacaaaaa 37201872  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 37182918 - 37182883
Alignment:
Q  141 aggttcttgaagtagttgtgttgttatgctttgttg 176  Q
    ||||||||||||||||||||||||||||||||||||    
T  37182918 aggttcttgaagtagttgtgttgttatgctttgttg 37182883  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 37194050 - 37194015
Alignment:
Q  141 aggttcttgaagtagttgtgttgttatgctttgttg 176  Q
    ||||||||||||||||||||||||||||||||||||    
T  37194050 aggttcttgaagtagttgtgttgttatgctttgttg 37194015  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 37202066 - 37202028
Alignment:
Q  8 acctgattgatcatttaaaatgtttgcatgagatgagtg 46  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  37202066 acctggttgatcattaaaaatgtttgcatgagatgagtg 37202028  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 37217100 - 37217058
Alignment:
Q  8 acctgattgatcatttaaaatgtttgcatgagatgagtggtat 50  Q
    ||||||||||||| | ||||||| |||||||||||||||||||    
T  37217100 acctgattgatcactaaaaatgtctgcatgagatgagtggtat 37217058  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 414932 - 415028
Alignment:
Q  99 ttaaatttctgcagaataaagtaaaaagac----tagtgagcattgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaa 192  Q
    |||||| | |||||||||||||||||| ||    |||||||||||||||||||||| |||||||| |||| | ||||||||||||| |||||||||||    
T  414932 ttaaatctatgcagaataaagtaaaaaaacaatctagtgagcattgaggttcttga-gtagttgttttgtaaagctttgttgggctgataaagtctaa 415028  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 7527097 - 7527026
Alignment:
Q  99 ttaaatttctgcagaataaagtaaaaagact--agtgagcattgaggttcttgaagtagttgtgttgttatg 168  Q
    |||||||||||||||| |||||||||| |||  |||||||||||||||||||||||||||| |||| |||||    
T  7527097 ttaaatttctgcagaacaaagtaaaaacactctagtgagcattgaggttcttgaagtagttatgttcttatg 7527026  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 414825 - 414864
Alignment:
Q  11 tgattgatcatttaaaatgtttgcatgagatgagtggtat 50  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  414825 tgattgatcattaaaaatgtttgcatgagatgattggtat 414864  T

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