View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743_low_16 (Length: 220)

Name: NF1743_low_16
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743_low_16
NF1743_low_16
[»] chr4 (6 HSPs)
chr4 (83-200)||(23054214-23054331)
chr4 (80-200)||(47518431-47518552)
chr4 (80-200)||(53202287-53202408)
chr4 (80-200)||(6410012-6410133)
chr4 (80-141)||(34227058-34227119)
chr4 (160-200)||(24957586-24957626)
[»] chr5 (6 HSPs)
chr5 (80-200)||(18696954-18697075)
chr5 (75-200)||(7766985-7767111)
chr5 (75-200)||(27170069-27170195)
chr5 (80-156)||(41355548-41355624)
chr5 (82-124)||(6030388-6030430)
chr5 (75-117)||(7271850-7271892)
[»] chr2 (7 HSPs)
chr2 (80-200)||(17375298-17375419)
chr2 (93-200)||(17281924-17282032)
chr2 (82-200)||(1551578-1551697)
chr2 (80-199)||(1895431-1895551)
chr2 (81-156)||(3921614-3921689)
chr2 (75-124)||(34660302-34660351)
chr2 (172-200)||(3921683-3921711)
[»] chr8 (3 HSPs)
chr8 (80-200)||(10408846-10408967)
chr8 (75-200)||(5994646-5994771)
chr8 (82-200)||(6444058-6444177)
[»] chr6 (2 HSPs)
chr6 (80-200)||(21881488-21881609)
chr6 (80-200)||(20740599-20740720)
[»] chr1 (7 HSPs)
chr1 (80-200)||(34117993-34118114)
chr1 (75-156)||(34654994-34655075)
chr1 (80-200)||(11407965-11408086)
chr1 (80-156)||(39709023-39709099)
chr1 (80-156)||(26236677-26236753)
chr1 (80-124)||(615782-615826)
chr1 (172-200)||(34655069-34655097)
[»] chr7 (1 HSPs)
chr7 (80-200)||(3302596-3302717)
[»] chr3 (2 HSPs)
chr3 (80-124)||(18269763-18269807)
chr3 (80-131)||(43276000-43276051)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 23054331 - 23054214
Alignment:
Q  83 aagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacacaccatcgtgactgatccatcac 182  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  23054331 aagcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatccagcacaccatcgtgactgatccatcac 23054232  T
Q  183 cacctatgttgcgagcaa 200  Q
    ||||||||||||||||||    
T  23054231 cacctatgttgcgagcaa 23054214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 47518552 - 47518431
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||| ||||| ||| ||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||| || || |||||| ||||||||||||    
T  47518552 atgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccaccattgtgactgatcca 47518453  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||||||||||    
T  47518452 tcaccacctatgttgcgagcaa 47518431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 53202287 - 53202408
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||| ||||| |||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||| || || |||||||||||| ||||      
T  53202287 atgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcaccaccatcgtgaccgatctg 53202386  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||||||||||    
T  53202387 tcaccacctatgttgcgagcaa 53202408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 6410012 - 6410133
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaac-acaccatcgtgactgatcca 178  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||   |||| ||||| | |  |||| ||||||| ||||||    
T  6410012 atgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatcca 6410111  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||| ||||||||||    
T  6410112 tcaccacctattttgcgagcaa 6410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 34227119 - 34227058
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaa 141  Q
    |||||| |||||  |||||||||||||||||| ||| |||||||||  ||||||||||||||    
T  34227119 atgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaa 34227058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 24957626 - 24957586
Alignment:
Q  160 caccatcgtgactgatccatcaccacctatgttgcgagcaa 200  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  24957626 caccttcgtgaccgatacatcaccacctatgttgcgagcaa 24957586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 18696954 - 18697075
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||||||||| ||||||||||||||||||| || |||| |||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  18696954 atgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgactgatcca 18697053  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||||| ||||    
T  18697054 tcaccacctatgttgcgggcaa 18697075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 7767111 - 7766985
Alignment:
Q  75 ccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactg 173  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||| ||| |||||||||||||| || |||||| ||| | |    
T  7767111 ccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcaccaccattgtggccg 7767012  T
Q  174 atccatcaccacctatgttgcgagcaa 200  Q
    ||| |||||||||||||||||||||||    
T  7767011 atcaatcaccacctatgttgcgagcaa 7766985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 27170195 - 27170069
Alignment:
Q  75 ccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactg 173  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||  || | | ||||||||||  | |||||||||||| |    
T  27170195 ccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccattaccaccatcgtgaccg 27170096  T
Q  174 atccatcaccacctatgttgcgagcaa 200  Q
    |||||||||||| || |||||||||||    
T  27170095 atccatcaccacttacgttgcgagcaa 27170069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 41355624 - 41355548
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 156  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||  ||||||| ||||||  |||||||||||||    
T  41355624 atgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatcca 41355548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 6030430 - 6030388
Alignment:
Q  82 gaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 124  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  6030430 gaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 7271850 - 7271892
Alignment:
Q  75 ccgcaatgaagcaccacgaaccaacacaaccaaagatacatcg 117  Q
    |||| |||||||||||| ||||||||||||||||||| |||||    
T  7271850 ccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 17375298 - 17375419
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||  ||||||    
T  17375298 atgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgatcgatcca 17375397  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||| ||||||    
T  17375398 tcaccacctatgttgtgagcaa 17375419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 17282032 - 17281924
Alignment:
Q  93 aaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatccatcaccacctatgt 191  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||| || |||||||||||||| || |||||| |||||||||||||||||||||||||    
T  17282032 aaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatccatcaccaccattgtgactgatccatcaccacctatgt 17281933  T
Q  192 tgcgagcaa 200  Q
    |||||||||    
T  17281932 tgcgagcaa 17281924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 1551697 - 1551578
Alignment:
Q  82 gaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacac-accatcgtgactgatccatc 180  Q
    |||| ||||| ||||||||||||||||||| ||||||||| |||  |||||||||||||| ||| | |||||||| ||| ||||||||||||||||||||    
T  1551697 gaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatccatcaccaccatcgtgactgatccatc 1551598  T
Q  181 accacctatgttgcgagcaa 200  Q
    ||||||||||||||||||||    
T  1551597 accacctatgttgcgagcaa 1551578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 1895431 - 1895551
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||  || || ||||||| |||| |||| |    
T  1895431 atgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcaccaccatcatgaccgatcaa 1895530  T
Q  179 tcaccacctatgttgcgagca 199  Q
    |||||||||||||||||||||    
T  1895531 tcaccacctatgttgcgagca 1895551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 3921614 - 3921689
Alignment:
Q  81 tgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 156  Q
    ||||| ||||| |||||||||||||||| || |||| ||||||||  ||||||||||||||  |||||||||||||    
T  3921614 tgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatcca 3921689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 34660302 - 34660351
Alignment:
Q  75 ccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 124  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  34660302 ccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 3921683 - 3921711
Alignment:
Q  172 tgatccatcaccacctatgttgcgagcaa 200  Q
    |||||||||||||||||||||||||||||    
T  3921683 tgatccatcaccacctatgttgcgagcaa 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 10408846 - 10408967
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| |  ||||||||||| |||||||||||||| || |||||||||||| | ||||    
T  10408846 atgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatcaccaccatcgtgaccgttcca 10408945  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||||||||||    
T  10408946 tcaccacctatgttgcgagcaa 10408967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 5994646 - 5994771
Alignment:
Q  75 ccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactg 173  Q
    |||| |||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||| | |||||||||||| || ||||||| |||  |    
T  5994646 ccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccaccatcatgatcg 5994745  T
Q  174 atccatcaccacctatgttgcgagcaa 200  Q
    |||||| | || |||||||||||||||    
T  5994746 atccattagca-ctatgttgcgagcaa 5994771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 6444058 - 6444177
Alignment:
Q  82 gaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatccatc 180  Q
    |||| ||||| ||||||||||| ||||||| | |||||||||||| || ||||| |||||   | || ||||||| || |||| | |||||  ||||||     
T  6444058 gaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcaccacctttgtgaccaatccata 6444157  T
Q  181 accacctatgttgcgagcaa 200  Q
    |||||||| |||||||||||    
T  6444158 accacctaagttgcgagcaa 6444177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 21881488 - 21881609
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||||||||| |||||||||||||| || |||||||||||| ||||||    
T  21881488 atgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatcca 21881587  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||| ||||||||||||    
T  21881588 tcaccacctttgttgcgagcaa 21881609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 20740599 - 20740720
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||| ||||  ||||||||||||||||||| |||||||||||||  ||||||||| |||| |||||||||||||| || ||||||||||||  |||||    
T  20740599 atgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatccatcaccaccatcgtgaccaatcca 20740698  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||||||||||    
T  20740699 tcaccacctatgttgcgagcaa 20740720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 34117993 - 34118114
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||| ||||||| || |||||||||||||||| ||  |||||||||| |||||||||||||| |||||||||||||| || |||||||||||| ||||||    
T  34117993 atgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatcca 34118092  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||||||||||    
T  34118093 tcaccacctatgttgcgagcaa 34118114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 34654994 - 34655075
Alignment:
Q  75 ccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 156  Q
    |||| |||||||||||| ||||||||||| ||||||| |||| ||||||||| | |||||||||||| ||||||||||||||    
T  34654994 ccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatatgatcca 34655075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 11408086 - 11407965
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    |||||||||||| |||||||||||||||||||   |||||||||||| |  |||||||| || | | || ||||||| || |||| ||||| | ||||||    
T  11408086 atgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatcca 11407987  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||| ||||||||||||||    
T  11407986 tcaccacttatgttgcgagcaa 11407965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 39709099 - 39709023
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 156  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||||||| | ||||| ||||||    
T  39709099 atgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatcca 39709023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 26236753 - 26236677
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 156  Q
    |||||||||||| ||||||| ||||||||||| ||||||| |||||| || ||||||| ||| | |||| |||||||    
T  26236753 atgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctgatcca 26236677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 615782 - 615826
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 124  Q
    |||||||||||| ||| ||||||||||||||| |||| |||||||    
T  615782 atgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 34655069 - 34655097
Alignment:
Q  172 tgatccatcaccacctatgttgcgagcaa 200  Q
    |||||||||||||||||||||||||||||    
T  34655069 tgatccatcaccacctatgttgcgagcaa 34655097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 3302596 - 3302717
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 178  Q
    ||||||||||||  ||||| |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||  | || |||||||||||  |||| |    
T  3302596 atgaagcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcaccaccatcgtgatcgatcta 3302695  T
Q  179 tcaccacctatgttgcgagcaa 200  Q
    ||||||||||||||||||||||    
T  3302696 tcaccacctatgttgcgagcaa 3302717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 18269807 - 18269763
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 124  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  18269807 atgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 43276000 - 43276051
Alignment:
Q  80 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagtt 131  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||    
T  43276000 atgaagcaccacaaaccaacacaaccaaagattcatcgaaatcataacagtt 43276051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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