View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743_low_17 (Length: 214)
Name: NF1743_low_17
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743_low_17 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0279 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2792922 - 2793135
Alignment:
| Q |
1 |
gtttagtttgatttatttgagtttatctattggcatacgcacttcttagtgagaaagtttatgttcatgtgcttttttagaatagcttataatgaaaaca |
100 |
Q |
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| T |
2792922 |
gtttagtttgatttatttgagtttatctattggcatacacacttcttagtgagaaagtttatgttcatatccttttttagaatagcttataatgaaaaca |
2793021 |
T |
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| Q |
101 |
aattccgcctatgtttaggtttgttttccattgtcagtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793022 |
aattccgcctatgtttaggtttgttttccattgtcggccccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtc |
2793121 |
T |
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| Q |
201 |
caatatctatgaca |
214 |
Q |
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|||||||||||||| |
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| T |
2793122 |
caatatctatgaca |
2793135 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 9121307 - 9121268
Alignment:
| Q |
165 |
tatgttaagcttgggcagcaaacataaaactttgtccaat |
204 |
Q |
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| T |
9121307 |
tatgttaagcttgggcaacaaacataaaactttgtccaat |
9121268 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 43920848 - 43920782
Alignment:
| Q |
149 |
ggtaaaaggagacggttatgttaagcttgggcagcaaa-cataaaactttgtccaatatctatgaca |
214 |
Q |
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| T |
43920848 |
ggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgaca |
43920782 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 1648024 - 1648101
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgaca |
214 |
Q |
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||||||||| ||||||||||||| |||| ||||| || | | |||| ||| |||||||||||| ||| ||||||||| |
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| T |
1648024 |
gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgaca |
1648101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 11992923 - 11993000
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgaca |
214 |
Q |
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||||||||| ||||||||| ||| |||| ||||| || | | |||| |||||||||||||||| ||| ||||||||| |
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| T |
11992923 |
gtcccaagcccgggtaaaagaagagggttgtgttaggcctcgacagccaacataaaactttgtcgaatctctatgaca |
11993000 |
T |
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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 37520607 - 37520684
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgaca |
214 |
Q |
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||||||||| ||||||||||||| |||| ||||| || | | |||| ||| |||||||||||| ||| ||||||||| |
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| T |
37520607 |
gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgaca |
37520684 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 52920995 - 52921072
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgaca |
214 |
Q |
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||||||||| ||||||||||||| |||| ||||| || | | |||| |||||||||||||||| ||| ||||||||| |
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| T |
52920995 |
gtcccaagcccgggtaaaaggagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgaca |
52921072 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 1651667 - 1651627
Alignment:
| Q |
170 |
taagcttgggcagcaaacataaaactttgtccaatatctat |
210 |
Q |
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| T |
1651667 |
taagcttgggcagcaaacataaaactttgtccgatctctat |
1651627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 9599924 - 9600001
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgaca |
214 |
Q |
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|||||||||| ||||||||||||| |||| ||||| || | | |||| ||| |||||||||||| || ||||||||| |
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| T |
9599924 |
gtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcggatctctatgaca |
9600001 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 51450845 - 51450771
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatg |
211 |
Q |
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| T |
51450845 |
gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatatctatg |
51450771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 20685718 - 20685682
Alignment:
| Q |
8 |
ttgatttatttgagtttatctattggcatacgcactt |
44 |
Q |
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|||| ||||||||||||||||||||||||| |||||| |
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| T |
20685718 |
ttgacttatttgagtttatctattggcataagcactt |
20685682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 18399 - 18476
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgaca |
214 |
Q |
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||||||||| ||||||||||||| |||| |||||||| | | || | ||| |||||||||||| ||| ||||||||| |
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| T |
18399 |
gtcccaagcccgggtaaaaggagaaggttgtgttaagcctcgacaaccaacgtaaaactttgtcgaatctctatgaca |
18476 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 20430648 - 20430571
Alignment:
| Q |
137 |
gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgaca |
214 |
Q |
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|||||||||| ||||||||||||| |||| ||||| || | | |||| ||| ||||||||||| ||| ||||||||| |
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| T |
20430648 |
gtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgaca |
20430571 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 30191073 - 30191109
Alignment:
| Q |
13 |
ttatttgagtttatctattggcatacgcacttcttag |
49 |
Q |
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||||||||||||||||||||||||| |||||| |||| |
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| T |
30191073 |
ttatttgagtttatctattggcataagcacttgttag |
30191109 |
T |
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