View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743_low_3 (Length: 481)
Name: NF1743_low_3
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 45496506 - 45496037
Alignment:
| Q |
18 |
caaagagttggaaaatgt--gtttttcttggttacaagtggtaacaaggagaaacttggggagattactagaatgaaccaacacaacaatcccttgagaa |
115 |
Q |
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| T |
45496506 |
caaagagttggaaaatgtacgtttttcttggttacaagtggtaacaatgagaaacttggggagattactagaatgaaccaacacaacaaacccttgagaa |
45496407 |
T |
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| Q |
116 |
accttcccaaaccaatcaacctatactagatacacaatatcgagcatccctcaacatttaacactactaaaccagaggcaacattgcttgg--------- |
206 |
Q |
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| T |
45496406 |
accttcccaaaccaatcaacctatactagatacacaatattgagcatccctcaacatttaacactgctaaaccagaggcaacattgcttggatttgttag |
45496307 |
T |
|
| Q |
207 |
----gacatgtgaattgggatgcaaaccatctagcacaccaatggatccaacaattccccttctctatgcgtctctgagtaaagaaccttggttgaaaat |
302 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45496306 |
ctgggacatgtgaattgggatgcaaaccatctagtataccaatggatccaacaattccccttctctatgtgtctctgagtaaagaaccttggttgaaaat |
45496207 |
T |
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| Q |
303 |
ttgttgtacttggcaacaaggccaaacatttcttatctatttcaataattaaatcaattttccaagactgtcctaccttagcacattacaaggctacaca |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
45496206 |
ttgttgtacttggcaacaaggccaaacatttcttatctatttcaataattaaatcaattttccaagactgtcctatcttggcacattacaaggctacaca |
45496107 |
T |
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| Q |
403 |
taaggttttgacaaatttgaagagatgtcctaaaaatttcttattcttccctcatattcccacttcatct |
472 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45496106 |
taaggttttgacaaatttgaagggatgtcctaaaaattgcttattcttccctcatattcccacttcatct |
45496037 |
T |
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