View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1743_low_5 (Length: 419)
Name: NF1743_low_5
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 39181350 - 39181738
Alignment:
| Q |
11 |
ttatactttataatcacgtaagataggtagcattctaaatcccaannnnnnnaagcgtaatacttgaattgtagaaaaccatgggtcgtgtgttgattaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39181350 |
ttatactttataatcacgtaagataggtagcattctaaatcccaatttttttaagcgtaatacttgaattgtagaaaaccatgggtcgtgtgttgattaa |
39181449 |
T |
|
| Q |
111 |
taatatgtagaaaacaaaaaatgtgcttgaaatccatgtgcaaaagataatatctgacaatgatcagaatgagtaaattcaatacagcacaggagaaggt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
39181450 |
taatatgtagaaaacaaaaaatgtgcttgaaatccacgtgcaaaagataatatctgacaatgatcagaatgagtaaattcaataaagcacaagagaaggt |
39181549 |
T |
|
| Q |
211 |
aaacatgcatcaaatacttgaatttctgggtcaagaagtattattaagtttgttgttgagttgttgtggtttagcaccccataagttgttagcgtggatc |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39181550 |
aaacatgcatcagatacttgaatttctgggtcaagatgtattattaagtttgttgttgagttgttgtggtttagcaccccataagttgttagcgtggatc |
39181649 |
T |
|
| Q |
311 |
ataattcatgttgttaagcaaactaaccaaactgatttatatcccaacctaaagggttgtctgatataaacatttttaaaggttaaggt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39181650 |
ataattcatgttgttaagcaaactaaccaaactgatttatatcccaagctaaagggttgtctgatataaacatttttaaaggttaaggt |
39181738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 39178161 - 39178547
Alignment:
| Q |
11 |
ttatactttataatcacgtaagataggtagcattctaaatcccaannnnnnnaagcgtaatacttgaattgtagaaaaccatgggtcgtgtgttgattaa |
110 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39178161 |
ttatactgtataatcacgaaagataggtagcatactaaatccaattttttttaagtgtaatacttgaattgtagaaaaccatgggtcgtgtgttgactaa |
39178260 |
T |
|
| Q |
111 |
taatatgtagaaaacaaaaaatgtgcttgaaatccatgtgcaaaagataatatctgacaatgatcagaatgagtaaattcaatacagcacaggagaaggt |
210 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| || |
|
|
| T |
39178261 |
tgatatttagaaaacaaaaaatgtgcttgaaatccaagtgcaaaagataatatccgacaatgatcagaatgagtaaattcaatacaacataggagaatgt |
39178360 |
T |
|
| Q |
211 |
aaacatgcatcaaatacttgaatttctgggtcaagaagtattattaagtttgttgttgagttgttgtggtttagcaccccataagttgttagcgtggatc |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39178361 |
aaacatgcatcagatacttgaatttctgggtcaagatgtattattaagtctgttgttgacttgttgtggtttatcatcccataagttgttagcgtggatc |
39178460 |
T |
|
| Q |
311 |
ataattcatgttgttaagcaaac--taaccaaactgatttatatcccaacctaaagggttgtctgatataaacatttttaaaggtta |
395 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39178461 |
ataattcatgttgttaagaaaactataaccaaactgatttatatcccaagttaaagggttgtctgatataaacatttttaagggtta |
39178547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University