View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743_low_7 (Length: 321)

Name: NF1743_low_7
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743_low_7
NF1743_low_7
[»] chr7 (8 HSPs)
chr7 (3-305)||(39332835-39333137)
chr7 (3-280)||(39569427-39569704)
chr7 (3-274)||(39552595-39552866)
chr7 (3-275)||(39344105-39344377)
chr7 (3-287)||(39358681-39358965)
chr7 (3-283)||(39543363-39543643)
chr7 (54-125)||(39585472-39585543)
chr7 (57-125)||(39579142-39579210)
[»] chr4 (2 HSPs)
chr4 (49-121)||(2882142-2882214)
chr4 (49-102)||(2871849-2871902)
[»] chr8 (1 HSPs)
chr8 (57-94)||(4494209-4494246)
[»] chr2 (3 HSPs)
chr2 (49-102)||(44215153-44215206)
chr2 (49-82)||(44238464-44238497)
chr2 (49-83)||(44227330-44227364)
[»] chr1 (1 HSPs)
chr1 (51-100)||(2166851-2166900)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 39332835 - 39333137
Alignment:
Q  3 tggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  39332835 tggaggaacagtgatgcagccgagattttttcaaattctttccaccaaggagatgatgaagaagctcttaaatgggctgcaattcagatccttcctactt 39332934  T
Q  103 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcga 202  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||| ||||| ||||||||||| |||||| |||||||||  ||||||||||||||    
T  39332935 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggtggaaccatcgagattgatgttgagaaccttgggatgcaagaaaagaaagatttgctcga 39333034  T
Q  203 aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaaaaaatattttgtccttgtg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39333035 aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaaaaaatattttgtccttgtg 39333134  T
Q  303 att 305  Q
    |||    
T  39333135 att 39333137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 280
Target Start/End: Complemental strand, 39569704 - 39569427
Alignment:
Q  3 tggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  39569704 tggaggagcagtgatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt 39569605  T
Q  103 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcga 202  Q
    |||  |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||    
T  39569604 ttgcgcgtttgaggaaaggtttgctcacttcacttcaaggggaagccgttgagattgatattgagaagcttgggctgcaagaaagaaaagatttgcttga 39569505  T
Q  203 aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggatt 280  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  39569504 aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatt 39569427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 39552866 - 39552595
Alignment:
Q  3 tggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    ||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39552866 tggaggaacagtgatgctgctgagatcttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 39552767  T
Q  103 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcga 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| || ||    
T  39552766 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccactgagatcgatgttgagaaccttgggttgcaagaaagaaaagatttacttga 39552667  T
Q  203 aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggtt 274  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  39552666 aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggtt 39552595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 39344105 - 39344377
Alignment:
Q  3 tggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    ||||||| ||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344105 tggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 39344204  T
Q  103 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcga 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||||||||||||||| |||||| ||||||||||||||| ||    
T  39344205 ttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaaagatttgcttga 39344304  T
Q  203 aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttc 275  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  39344305 aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatggacaggttc 39344377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 39358681 - 39358965
Alignment:
Q  3 tggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    ||||||| ||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  39358681 tggaggaacagtgatgctgctgagatcttttcaaattcttttcaccaagaagatgatgaagaatctcttaaatgggctgcaattcagaagcttcctactt 39358780  T
Q  103 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcga 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||||||||||||||| ||||||||||||||||||| || ||    
T  39358781 ttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagaaagaaaagatttacttga 39358880  T
Q  203 aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaaaaaa 287  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  39358881 aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggataggttcgaattcaaaaaa 39358965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 39543643 - 39543363
Alignment:
Q  3 tggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    ||||||| ||| ||||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39543643 tggaggaacagtgatgctgctgagattttttctaattcttttcgccaagaagatgatgaagaagctcttaaatgggctgccattcagaaacttcctactt 39543544  T
Q  103 ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcga 202  Q
    ||| |||||| ||||||||||||||| |||  || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || ||    
T  39543543 ttgcacgtttaaggaaaggtttgctctctttgctgcaaggggaagccactgagatcgatgttgagaagcttgggttgcaagaaagaaaagatttacttga 39543444  T
Q  203 aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaa 283  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||| ||||||    
T  39543443 aagacttgttagacttgctgaagaggacaatgagaagtttttgctcaaactcaaggatcgaatcgacaggttcgaattcaa 39543363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 39585543 - 39585472
Alignment:
Q  54 gatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttg 125  Q
    ||||||||||| ||| | |||||||||||||||||||  ||||| ||| ||| ||| ||||||| |||||||    
T  39585543 gatgatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39585472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 39579210 - 39579142
Alignment:
Q  57 gatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttg 125  Q
    |||||||| ||| | |||||||||||||||||||  ||||| ||| ||| ||| ||||||| |||||||    
T  39579210 gatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39579142  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 2882142 - 2882214
Alignment:
Q  49 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaagg 121  Q
    |||| |||||||||||||||||||||||||||||| || | ||||| ||||||| | | ||||||||||||||    
T  2882142 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 2882214  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 2871849 - 2871902
Alignment:
Q  49 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    ||||||||||||||||||| || ||||||||||||||| | ||||| |||||||    
T  2871849 aagaagatgatgaagaagccctcaaatgggctgcaattgaaaaactccctactt 2871902  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 4494209 - 4494246
Alignment:
Q  57 gatgaagaagctcttaaatgggctgcaattcagaaact 94  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4494209 gatgaagaagctcttaaatgggctgcaattgagaaact 4494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 44215206 - 44215153
Alignment:
Q  49 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 102  Q
    |||||||||||||||||||||| |||||||||||| || | ||||| |||||||    
T  44215206 aagaagatgatgaagaagctctcaaatgggctgcacttgaaaaactacctactt 44215153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 44238497 - 44238464
Alignment:
Q  49 aagaagatgatgaagaagctcttaaatgggctgc 82  Q
    ||||||||||||||||||||||||||||||||||    
T  44238497 aagaagatgatgaagaagctcttaaatgggctgc 44238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 44227364 - 44227330
Alignment:
Q  49 aagaagatgatgaagaagctcttaaatgggctgca 83  Q
    |||||||||||||||||||||| ||||||||||||    
T  44227364 aagaagatgatgaagaagctctcaaatgggctgca 44227330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 2166900 - 2166851
Alignment:
Q  51 gaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctac 100  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||||||    
T  2166900 gaagacgatgaagaagctcttaaatgggctgctattgagagacttcctac 2166851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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