View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743_low_8 (Length: 305)
Name: NF1743_low_8
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 1855146 - 1855267
Alignment:
| Q |
84 |
atgcaatttaaggaaaataatttgtataaatgagtaggtaggtatttatacctaatcaggtaaatgagtacatttttcattgacaaattttcagttatta |
183 |
Q |
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| T |
1855146 |
atgcaatttaaggaaaataatttgtataaatgagtaggtaggtatttgtacctaatcaggtaaatgagtacatttttcattgacaaatttccagttatta |
1855245 |
T |
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| Q |
184 |
aaattgagatcgagatgtattc |
205 |
Q |
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| T |
1855246 |
aaattgagatcgagatgtattc |
1855267 |
T |
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Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1854908 - 1855004
Alignment:
| Q |
1 |
aagtggtctatcatggaatccctttaaaaatattctttggtcaacagaacccctttaaattattcctaagattctatagtaagatgcaatttaagga |
97 |
Q |
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| T |
1854908 |
aagtggtctatcatgcaatccctttaaaaatattctttggtcaacagaacccctttaaattattcctaagattctatagtaagatgcaatttaagga |
1855004 |
T |
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