View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743_low_9 (Length: 296)
Name: NF1743_low_9
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 281
Target Start/End: Complemental strand, 24499131 - 24498856
Alignment:
| Q |
6 |
aaattgtacctttacgccaaaaaactcacaaaggtgcagtttttggttttatttnnnnnnngatcactgacactctttgttggttgattagtcattttac |
105 |
Q |
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| T |
24499131 |
aaattgtacctttacgccaaaaaactcacaaaggtgcagtttttggttttatttaaaaaaagatcactgacactctttgttggttgattagtcattttac |
24499032 |
T |
|
| Q |
106 |
tatgatataagataagaaagtagattgtatattaatcatttttatatgatgagaaagtgaactttgtaatacccttataaggacatatattgtttctgtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24499031 |
tatgatataagataagaaagtagattgtatattagtcatttttatatgatgagaaagtgaactttgtaatacccttataagggcatatattgtttctgtt |
24498932 |
T |
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| Q |
206 |
aagtgttgttatcataaggttggcttgtatttttaatgtactttgattttaaataatcaacatagtgttccttttt |
281 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||||||||| ||||||| |
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| T |
24498931 |
aagtgttgttatcataaggttggcttgtattttttatgtactttgatatcaaattatcaacatagtgtgccttttt |
24498856 |
T |
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