View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1744-Insertion-1 (Length: 816)
Name: NF1744-Insertion-1
Description: NF1744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1744-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 549
Target Start/End: Complemental strand, 3676145 - 3675616
Alignment:
| Q |
7 |
aatattgacatgaatccggagtcggcatctagtggcactagctacggcatcctacaaaggtggaagacggaggactccctcaagagagcctctttgggat |
106 |
Q |
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| T |
3676145 |
aatattgacatgaatccggagtcggcatctagtggcactagctacggcatcctacaaaggtggaagagggaggactccctcaagagagcctctttgggat |
3676046 |
T |
|
| Q |
107 |
tgagaggtgttactctatttttctctttgacttccttcctcctcatggcaagtaacaaacatggttattggaaaaactttgaccactatcaagaatacag |
206 |
Q |
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| T |
3676045 |
tgagaggtgttactctatttttctctttgacttccttcctcctcatggcaagtaacaaacatggttatggggaaaactttgaccactatcaagaatacag |
3675946 |
T |
|
| Q |
207 |
gtnnnnnnntatgaagtttaatttttatatatcgtcaatgtacaaatattctacgcatgatatacttatagggttgccacatcatttaatgaattaaaaa |
306 |
Q |
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| T |
3675945 |
gt-aaaaaatatgaagtttaatttttatatatcgtcaatgtacaaatattctacacatgatatac--------ttgccacatcatttaatgaattaaaaa |
3675855 |
T |
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| Q |
307 |
cacatgacttgtaaagcttttatgtattcgcgatgaacaaaattttgattttgagaaataacattgcgactattaacaatataatgcaactatcacaaca |
406 |
Q |
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| T |
3675854 |
cacatgatttgtaaagcttttgtgtattcgcgatgaacaaaattttgattttaagaaataacattgcaactattaacaatataatgcaactatcacaaca |
3675755 |
T |
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| Q |
407 |
attatcactactannnnnnnnnnnnngtcgaaataatagaaaaattagagagnnnnnnnnntgaaattcattgtcatatttggcgcctgtaatacttaac |
506 |
Q |
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| T |
3675754 |
attatcactacta---ttttttttttgttgaaataatagaaaaattagagag-aaaaaaaatgaaattcattgtcatatttggcgcctgtaatacttaac |
3675659 |
T |
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| Q |
507 |
aacatatctaacgatatccttnnnnnnncatatttaacgataa |
549 |
Q |
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| T |
3675658 |
aacatatctaacaatatccttaaaaaaacatatttaacgataa |
3675616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 618 - 816
Target Start/End: Complemental strand, 3675548 - 3675350
Alignment:
| Q |
618 |
gtcgtgaaatgtgatatgatgggtttttgtcaaaatttaatttgtatggaactttaattaataannnnnnnaatcttaggtatttgcttgtggtagcatt |
717 |
Q |
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| T |
3675548 |
gtcgtgaaatgtgatatgatgggtttttgtcaaaatttaatttgtatggaactttaattaataatttttttaatcttaggtatttgcttgtggtagcatt |
3675449 |
T |
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| Q |
718 |
ttttacaagtatatacacaggaagccaagtgtatcgtcaaattcatgaacttatcactgggaataatatatttcgacctacaactgcagctgtgattga |
816 |
Q |
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| T |
3675448 |
ttttacaagtatatacacaggaagccaagtgtatcgtcaaattcatgaacttatcactgggaataatatatttcgacctacaactgcagctgtgattga |
3675350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 4743777 - 4743592
Alignment:
| Q |
7 |
aatattgacatgaatccggagtcggcatctagtggcactagctacggcatcctacaaaggtggaagacggaggactccctcaagagagcctctttgggat |
106 |
Q |
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| T |
4743777 |
aatatagacatgaatttggagccagcaaatagtggcactagctatgggatcctacaacggtggaagagggaagactccctcaagagagcctctttgggat |
4743678 |
T |
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| Q |
107 |
tgagaggtg-ttactctatttttctctttgacttccttcctcctcatggcaagtaacaaacatggttattggaaaaactttgaccac |
192 |
Q |
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| T |
4743677 |
tgagaggtgtttactctatttttctc-ttgacttctttcctcctcgtggcaagtaacaaccatggttattgggaaaattttgaccac |
4743592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 4750466 - 4750400
Alignment:
| Q |
79 |
gactccctcaagagagcctctttgggattgagaggtgttactctatttttctctttgacttccttcc |
145 |
Q |
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| T |
4750466 |
gactccctcaagagagcctctttggaattgagaggtgttactctatttttctctttgacttccttcc |
4750400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 8279560 - 8279526
Alignment:
| Q |
284 |
cacatcatttaatgaattaaaaacacatgacttgt |
318 |
Q |
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| T |
8279560 |
cacatcatttaatgagttaaaaacacatgacttgt |
8279526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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