View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17440_high_4 (Length: 295)
Name: NF17440_high_4
Description: NF17440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17440_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 30884011 - 30884294
Alignment:
| Q |
1 |
tcatcaacgccacaaagacaccagcagtaaatggatatagaggacctagatcacctgctggccttgtggagcgaacaacttcaccgaccttccacatccg |
100 |
Q |
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| T |
30884011 |
tcatcaacgccacaaagacaccagcagtaaatggatatagaggacctagatcacctgctggccttgtagagcgaacaacttcaccgaccttccacatccg |
30884110 |
T |
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| Q |
101 |
ggtctgatcaattttgcccatgggaaatgcaggcagaccctctttctcctgtaaaacacggaaataatttgaagtcctccacataaaggccaactctaaa |
200 |
Q |
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| T |
30884111 |
ggtctgatcaattttgcccatgggaaatgcaggcagaccctctttctcctgtaaaacacggaaataatttgaagtcctccacataaaggccaactctaaa |
30884210 |
T |
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| Q |
201 |
tgggaaatagatatgcacttacgtaaaagcgacgaccagccaaaacaacactacgaatctcactaccactggctacatcttcat |
284 |
Q |
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| T |
30884211 |
tgtaaaatagatatgcacttacgtaaaagcgacgaccagccaaaacaacactacgaatctcactaccactggctacatcttcat |
30884294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 39344062 - 39343920
Alignment:
| Q |
9 |
gccacaaagacaccagcagtaaatggatatagaggacctagatcacctgctggccttgtggagcgaacaacttcaccgaccttccacatccgggtctgat |
108 |
Q |
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| T |
39344062 |
gccacaaagacaccagcggtaaaaggatataatgggccttgatctcctgctggtctagtagaccggacacgctcgccaaccttccacatgcgggtctgga |
39343963 |
T |
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| Q |
109 |
caattttgcccatgggaaatgcaggcagaccctctttctcctg |
151 |
Q |
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| T |
39343962 |
caattttacccatgggaaatgcaggtagaccttctttctcctg |
39343920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 39343850 - 39343779
Alignment:
| Q |
213 |
atgcacttacgtaaaagcgacgaccagccaaaacaacactacgaatctcactaccactggctacatcttcat |
284 |
Q |
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|||| ||||| ||||| |||| ||||||| ||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
39343850 |
atgcgcttacataaaaatgacgcccagccagaacaacattacgaatctcactgccactggctacatcctcat |
39343779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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