View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17440_high_6 (Length: 286)
Name: NF17440_high_6
Description: NF17440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17440_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 41106984 - 41107226
Alignment:
| Q |
18 |
cattcgtatccaagcattaccttacctccctgcttaaaattgaccttgttctcaatgtcatggccatgtattgtatatattgcataagaatgtctacttt |
117 |
Q |
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| T |
41106984 |
cattcgtatccaagcattaccttacctccccgattaaaattgaccttgttctcaatgtcatggccatgtattgtatata-tgcataagaatgtctgcttt |
41107082 |
T |
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| Q |
118 |
actgcacaattgaatcaaatgtatcgtcaaattaccccataatttgatataggctttcagtgttgaaattttccttccacaccagtaggaaaacactagg |
217 |
Q |
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| T |
41107083 |
actgcacaattgaatcaaatgtatcatcaaattaccccataatttgatataggcttt----------attttccttccacaccagtaggaaaacactagg |
41107172 |
T |
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| Q |
218 |
cttgttgaatcttaaatattctgcacctgtatctgcatcaaatgtactacacag |
271 |
Q |
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| T |
41107173 |
cttgttgaatcttaaatattctgcacctgtatctgcatcaaatgtactacacag |
41107226 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 35708760 - 35708705
Alignment:
| Q |
22 |
cgtatccaagcattaccttacctccctgcttaaaattgaccttgttctcaatgtca |
77 |
Q |
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| T |
35708760 |
cgtatccaagcattaccttacctcccctattaagattgaccttgttctcaatgtca |
35708705 |
T |
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